Files in BioHPC/iCAT
immune Cell Analysis Tool
.Rbuildignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/classMat.R
R/getLib.R
R/iCATinteractive.R
R/plotHist.R
R/pred.R
R/processFiles.R
R/readTrn.R
R/savePlot.R
R/train.R
R/trnStats.R
R/tsvDir.R
README.md
_pkgdown.yml
docs/LICENSE-text.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/iCAT.html
docs/articles/iCAT_files/figure-html/unnamed-chunk-8-1.png
docs/articles/index.html
docs/articles/vignette.html
docs/articles/vignette_files/figure-html/unnamed-chunk-1-1.png
docs/articles/vignette_files/figure-html/unnamed-chunk-1-2.png
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/man/figures/icat.png
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/classMat.html
docs/reference/figures/icat.png
docs/reference/figures/lib-icat.png
docs/reference/figures/lib-icat2.png
docs/reference/figures/logo.png
docs/reference/figures/pred-icat.png
docs/reference/getLib.html
docs/reference/iCATinteractive.html
docs/reference/index.html
docs/reference/plot.pdf
docs/reference/plotHist-1.png
docs/reference/plotHist.html
docs/reference/pred.html
docs/reference/processFiles.html
docs/reference/readTrn.html
docs/reference/savePlot.html
docs/reference/train.html
docs/reference/trnStats.html
docs/reference/tsvDir.html
index.md
inst/app/app.R
inst/app/www/cat2.pdf
inst/app/www/cat2.png
inst/extdata/Indp/KJW127_HLA-A2_61_14_days.tsv
inst/extdata/Indp/KJW127_HLA-A2_61_PRE.tsv
inst/extdata/Indp/KJW127_HLA-A2_64_14_days.tsv
inst/extdata/Indp/KJW127_HLA-A2_64_PRE.tsv
inst/extdata/Indp/KJW127_HLA-A2_65_14_days.tsv
inst/extdata/Indp/KJW127_HLA-A2_65_PRE.tsv
inst/extdata/Indp/KJW127_HLA-A2_69_14_days.tsv
inst/extdata/Indp/KJW127_HLA-A2_69_PRE.tsv
inst/extdata/Indp/KJW127_HLA-A2_70_14_days.tsv
inst/extdata/Indp/KJW127_HLA-A2_70_PRE.tsv
inst/extdata/Indp/KJW127_HLA-A2_71_14_days.tsv
inst/extdata/Indp/KJW127_HLA-A2_71_PRE.tsv
inst/extdata/Indp/KJW127_HLA-A2_72_14_days.tsv
inst/extdata/Indp/KJW127_HLA-A2_72_PRE.tsv
inst/extdata/Indp/KJW127_HLA-A2_73_14_days.tsv
inst/extdata/Indp/KJW127_HLA-A2_73_PRE.tsv
inst/extdata/Indp/KJW127_HLA-A2_76_14_days.tsv
inst/extdata/Indp/KJW127_HLA-A2_76_PRE.tsv
inst/extdata/Indp/KJW127_HLA-A2_78_14_days.tsv
inst/extdata/Indp/KJW127_HLA-A2_78_PRE.tsv
inst/extdata/Post/KJW100_10_8wk.tsv
inst/extdata/Post/KJW100_1_8wk.tsv
inst/extdata/Post/KJW100_20_8wk.tsv
inst/extdata/Post/KJW100_21_8wk.tsv
inst/extdata/Post/KJW100_22_8wk.tsv
inst/extdata/Post/KJW100_23_8wk.tsv
inst/extdata/Post/KJW100_24_8wk.tsv
inst/extdata/Post/KJW100_25_8wk.tsv
inst/extdata/Post/KJW100_26_8wk.tsv
inst/extdata/Post/KJW100_27_8wk.tsv
inst/extdata/Post/KJW100_28_8wk.tsv
inst/extdata/Post/KJW100_29_8wk.tsv
inst/extdata/Post/KJW100_2_8wk.tsv
inst/extdata/Post/KJW100_3_8wk.tsv
inst/extdata/Post/KJW100_4_8wk.tsv
inst/extdata/Post/KJW100_6_8wk.tsv
inst/extdata/Post/KJW100_7_8wk.tsv
inst/extdata/Post/KJW100_8_8wk.tsv
inst/extdata/Post/KJW100_9_8wk.tsv
inst/extdata/Post/KJW100_HLA-A2_10_14_day.tsv
inst/extdata/Post/KJW100_HLA-A2_1_14_day.tsv
inst/extdata/Post/KJW100_HLA-A2_20_14_day.tsv
inst/extdata/Post/KJW100_HLA-A2_21_14_day.tsv
inst/extdata/Post/KJW100_HLA-A2_22_14_day.tsv
inst/extdata/Post/KJW100_HLA-A2_23_14_day.tsv
inst/extdata/Post/KJW100_HLA-A2_24_14_day.tsv
inst/extdata/Post/KJW100_HLA-A2_25_14_day.tsv
inst/extdata/Post/KJW100_HLA-A2_26_14_day.tsv
inst/extdata/Post/KJW100_HLA-A2_27_14_day.tsv
inst/extdata/Post/KJW100_HLA-A2_28_14_day.tsv
inst/extdata/Post/KJW100_HLA-A2_29_14_day.tsv
inst/extdata/Post/KJW100_HLA-A2_2_14_day.tsv
inst/extdata/Post/KJW100_HLA-A2_3_14_day.tsv
inst/extdata/Post/KJW100_HLA-A2_4_14_day.tsv
inst/extdata/Post/KJW100_HLA-A2_6_14_day.tsv
inst/extdata/Post/KJW100_HLA-A2_7_14_day.tsv
inst/extdata/Post/KJW100_HLA-A2_8_14_day.tsv
inst/extdata/Post/KJW100_HLA-A2_9_14_day.tsv
inst/extdata/Post/KJW103_HLA-A2_41_14_day.tsv
inst/extdata/Post/KJW103_HLA-A2_41_8wk.tsv
inst/extdata/Post/KJW103_HLA-A2_42_14_day.tsv
inst/extdata/Post/KJW103_HLA-A2_42_8wk.tsv
inst/extdata/Post/KJW103_HLA-A2_43_14_day.tsv
inst/extdata/Post/KJW103_HLA-A2_43_8wk.tsv
inst/extdata/Post/KJW103_HLA-A2_44_14_day.tsv
inst/extdata/Post/KJW103_HLA-A2_44_8wk.tsv
inst/extdata/Post/KJW103_HLA-A2_45_14_day.tsv
inst/extdata/Post/KJW103_HLA-A2_45_8wk.tsv
inst/extdata/Post/KJW103_HLA-A2_50_14_day.tsv
inst/extdata/Post/KJW103_HLA-A2_50_8wk.tsv
inst/extdata/Post/KJW103_HLA-A2_51_14_day.tsv
inst/extdata/Post/KJW103_HLA-A2_51_8wk.tsv
inst/extdata/Post/KJW103_HLA-A2_52_14_day.tsv
inst/extdata/Post/KJW103_HLA-A2_52_8wk.tsv
inst/extdata/Post/KJW103_HLA-A2_53_14_day.tsv
inst/extdata/Post/KJW103_HLA-A2_53_8wk.tsv
inst/extdata/Post/KJW103_HLA-A2_54_14_day.tsv
inst/extdata/Post/KJW103_HLA-A2_54_8wk.tsv
inst/extdata/Pre/KJW100_HLA-A2_10_PRE.tsv
inst/extdata/Pre/KJW100_HLA-A2_29_PRE.tsv
inst/extdata/Pre/KJW100_HLA-A2_6_PRE.tsv
inst/extdata/Pre/KJW100_HLA-A2_7_PRE.tsv
inst/extdata/Pre/KJW100_HLA-A2_8_PRE.tsv
inst/extdata/Pre/KJW100_HLA-A2_9_PRE.tsv
inst/extdata/Pre/KJW102_HLA-A2_11_PRE.tsv
inst/extdata/Pre/KJW102_HLA-A2_16_PRE.tsv
inst/extdata/Pre/KJW102_HLA-A2_17_PRE.tsv
inst/extdata/Pre/KJW102_HLA-A2_18_PRE.tsv
inst/extdata/Pre/KJW102_HLA-A2_31_PRE.tsv
inst/extdata/Pre/KJW102_HLA-A2_33_PRE.tsv
inst/extdata/Pre/KJW102_HLA-A2_35_PRE.tsv
inst/extdata/Pre/KJW102_HLA-A2_37_PRE.tsv
inst/extdata/Pre/KJW102_HLA-A2_38_PRE.tsv
inst/extdata/Pre/KJW102_HLA-A2_39_PRE.tsv
inst/extdata/Pre/KJW102_HLA-A2_40_PRE.tsv
inst/extdata/Pre/KJW103_HLA-A2_41_PRE.tsv
inst/extdata/Pre/KJW103_HLA-A2_42_PRE.tsv
inst/extdata/Pre/KJW103_HLA-A2_43_PRE.tsv
inst/extdata/Pre/KJW103_HLA-A2_44_PRE.tsv
inst/extdata/Pre/KJW103_HLA-A2_45_PRE.tsv
inst/extdata/Pre/KJW103_HLA-A2_46_PRE.tsv
inst/extdata/Pre/KJW103_HLA-A2_49_PRE.tsv
inst/extdata/Pre/KJW103_HLA-A2_50_PRE.tsv
inst/extdata/Pre/KJW103_HLA-A2_51_PRE.tsv
inst/extdata/Pre/KJW103_HLA-A2_52_PRE.tsv
inst/extdata/Pre/KJW103_HLA-A2_53_PRE.tsv
inst/extdata/Pre/KJW103_HLA-A2_54_PRE.tsv
inst/extdata/Pre/KJW103_HLA-A2_57_PRE.tsv
inst/extdata/Pre/KJW103_HLA-A2_58_PRE.tsv
inst/extdata/Pre/KJW103_HLA-A2_59_PRE.tsv
man/classMat.Rd
man/figures/icat.png
man/figures/lib-icat.png
man/figures/lib-icat2.png
man/figures/logo.png
man/figures/pred-icat.png
man/getLib.Rd
man/iCATinteractive.Rd
man/plotHist.Rd
man/pred.Rd
man/processFiles.Rd
man/readTrn.Rd
man/savePlot.Rd
man/train.Rd
man/trnStats.Rd
man/tsvDir.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
screenshot/icat.png
screenshot/lib-icat.png
screenshot/lib-icat2.png
screenshot/pred-icat.png
screenshot/pred-icatv2.png
vignettes/iCAT.Rmd
vignettes/iCAT.html
