Files in BioHPC/megaR

An interactive R package for Metagenomic Data Analysis for Disease Prediction

DESCRIPTION

LICENSE

MegaR_1.0.tar.gz

NAMESPACE

R/getGoodfeature.R R/getLevelData.R R/getconfuMat.R R/gettrainingdoneglm.R R/gettrainingdonerf.R R/gettrainingdonesvm.R R/getunknpredict.R R/megaRshiny.R R/plotimptfeatures.R R/readmetadata.R R/savePlot.R R/validation.R README.md

data/16S/Antibiotic/Antibiotics_metadata.tsv

data/16S/Antibiotic/otu_table.filtered.2Maaslin.txt

data/16S/T1D/diabimmune_t1d_16s_otu_table.biom.txt

data/16S/T1D/metadata.tsv

data/16S/Three_country/merged_three_Countrymetadata.tsv

data/16S/Three_country/qiime_three.txt

data/WGS/Antibiotic/Antibiotics_metadata.tsv

data/WGS/Antibiotic/merged_metaphlan_antibiotic.txt

data/WGS/T1D.zip

data/WGS/T1D/merged_metaphlan_t1d.txt

data/WGS/T1D/metadata.tsv

data/WGS/Three_country/merged_three_Countrymetadata.tsv

data/WGS/Three_country/merged_three_country.txt

man/getGoodfeature.Rd man/getLevelData.Rd man/getconfuMat.Rd man/gettrainingdoneglm.Rd man/gettrainingdonerf.Rd man/gettrainingdonesvm.Rd man/getunknpredict.Rd man/megaR.Rd man/plotimptfeatures.Rd man/readmetadata.Rd man/readmydata.Rd man/savePlot.Rd man/validation.Rd

screenshot/AUC.PNG

screenshot/Data_input_table.png

screenshot/Datainput.gif

screenshot/Interface.png

screenshot/ModelBuilding1.gif

screenshot/ModelBuilding2.gif

screenshot/Prediction-02.png

screenshot/Prediction_CustomModel.png

screenshot/Prediction_CustomModel2.png

screenshot/Prediction_CustomModel3.png

screenshot/Prediction_table.png

screenshot/Preprocess_genus.png

screenshot/Preprocessing_species.png

screenshot/Preprocessing_table.png

screenshot/Train_stats.png

screenshot/Validation.PNG

screenshot/accuracy.PNG

screenshot/accuracy_rf_plot.png

screenshot/data_input.png

screenshot/download.PNG

screenshot/features.PNG

screenshot/input.gif

screenshot/prediction.PNG

screenshot/preprocessing.gif

screenshot/rf_train_plot.png

screenshot/test_error_db.png

screenshot/test_error_stats_rf_db.png

screenshot/testerror.PNG

screenshot/teststats.PNG

screenshot/topimptfeature.png

screenshot/trainerror.PNG

screenshot/trainstats.PNG

scripts/README

BioHPC/megaR documentation built on Oct. 3, 2021, 10:05 a.m.