gettrainingdonesvm: MegaR gettrainingdonesvm

In BioHPC/megaR: An interactive R package for Metagenomic Data Analysis for Disease Prediction

Description

This is the function to get class information for the input data from the metadata file and build the support vector machines as predictive models.

Usage

gettrainingdonesvm(mytable3, classid, sampleid, ruleout, psd, metadat,
  svmmethod)

Arguments

mytable3	processed input file with features
classid	the column number in metadata file in which the class of input data is stored
sampleid	the column number of metadata file which contain sample ids that match with input data
ruleout	the class which is to be removed from classification model
psd	the percentage of data to be split into training set
metadat	the metadata path
svmmethod	one of the many svm method available in caret

BioHPC/megaR documentation built on Oct. 3, 2021, 10:05 a.m.