GOstats-defunct: Defunct Functions in GOstats Package
In Bioconductor/GOstats: Tools for manipulating GO and microarrays

GOstats-defunct

R Documentation

Defunct Functions in GOstats Package

Description

The functions or variables listed here are no longer part of GOstats as they are not needed (any more).

Usage

combGOGraph()
hyperGtable()
hyperG2Affy()
selectedGenes()
GOHyperG()
GOKEGGHyperG()
getGoGraph()

Details

combGOGraph was replaced by join. hyperGtable was replaced by summary. hyperG2Affy was replaced by probeSetSummary. GOLeaves was replaced by graph::leaves. selectedGenes was replaced by geneIdsByCategory. GOHyperG was replaced by hyperGTest. GOKEGGHyperG was replaced by hyperGTest. getGoGraph was replaced by GOGraph.