GSEABase-package: Gene set enrichment data structures and methods

GSEABase-packageR Documentation

Gene set enrichment data structures and methods

Description

This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA). The GeneSet class provides a common data structure for representing gene sets. The GeneColorSet class allows genes in a set to be associated with phenotypes. The GeneSetCollection class facilitates grouping together a list of related gene sets. The GeneIdentifierType class hierarchy reflects how genes are represented (e.g., Entrez versus symbol) in the gene set. mapIdentifiers provides a way to convert identifiers in a set from one type to another. The CollectionType class hierarchy reflects how the gene set was made, and can order genes into distinct sets or collections.

Author(s)

Written by Martin Morgan, Seth Falcon, Robert Gentleman. Maintainer: Biocore Team c/o BioC user list <bioconductor@stat.math.ethz.ch>

See Also

GeneSet, GeneColorSet GeneSetCollection

Examples

example(GeneSet)

Bioconductor/GSEABase documentation built on April 29, 2022, 12:04 p.m.