inst/registered/NCBI_assemblies/Pan_troglodytes.R

In Bioconductor/GenomeInfoDb: Utilities for manipulating chromosome names, including modifying them to follow a particular naming style

ORGANISM <- "Pan troglodytes"

### List of assemblies by date.
ASSEMBLIES <- list(
    list(assembly="Pan_troglodytes-2.1",
         date="2006/03/16",
         assembly_accession="GCF_000001515.3",  # panTro2
         circ_seqs="MT"),

    ## The sequence names in this one are seriously messed up!
    list(assembly="Pan_troglodytes-2.1.3",
         date="2010/11/15",
         assembly_accession="GCA_000001515.3",  # panTro3
         circ_seqs=character(0)),

    list(assembly="Pan_troglodytes-2.1.4",
         date="2011/03/25",
         assembly_accession="GCF_000001515.5",  # panTro4
         circ_seqs="MT"),

    list(assembly="Pan_tro 3.0",
         date="2016/05/03",
         assembly_accession="GCF_000001515.7",  # panTro5
         circ_seqs="MT"),

    list(assembly="Clint_PTRv2",
         date="2018/01/19",
         assembly_accession="GCA_002880755.3",  # panTro6
         circ_seqs="MT")
)