Files in Bioconductor/GenomicAlignments
Representation and manipulation of short genomic alignments

DESCRIPTION
NAMESPACE
NEWS
R/GAlignmentPairs-class.R R/GAlignments-class.R R/GAlignmentsList-class.R R/GappedReads-class.R R/OverlapEncodings-class.R R/cigar-utils.R R/coordinate-mapping-methods.R R/coverage-methods.R R/encodeOverlaps-methods.R R/findCompatibleOverlaps-methods.R R/findMateAlignment.R R/findOverlaps-methods.R R/findSpliceOverlaps-methods.R R/intra-range-methods.R R/junctions-methods.R R/pileLettersAt.R R/readGAlignments.R R/sequenceLayer.R R/setops-methods.R R/stackStringsFromBam.R R/summarizeOverlaps-methods.R R/utils.R R/zzz.R
inst/CITATION
inst/extdata/sm_treated1.bam
inst/extdata/sm_untreated1.bam
inst/unitTests/test_GAlignments-class.R inst/unitTests/test_GAlignmentsList-class.R inst/unitTests/test_cigar-utils.R inst/unitTests/test_coordinate-mapping-methods.R inst/unitTests/test_findSpliceOverlaps-methods.R inst/unitTests/test_intra-range-methods.R inst/unitTests/test_readGAlignmentPairs.R inst/unitTests/test_readGAlignments.R inst/unitTests/test_readGAlignmentsList.R inst/unitTests/test_summarizeOverlaps-methods.R man/GAlignmentPairs-class.Rd man/GAlignments-class.Rd man/GAlignmentsList-class.Rd man/GappedReads-class.Rd man/OverlapEncodings-class.Rd man/cigar-utils.Rd man/coordinate-mapping-methods.Rd man/coverage-methods.Rd man/encodeOverlaps-methods.Rd man/findCompatibleOverlaps-methods.Rd man/findMateAlignment.Rd man/findOverlaps-methods.Rd man/findSpliceOverlaps-methods.Rd man/intra-range-methods.Rd man/junctions-methods.Rd man/pileLettersAt.Rd man/readGAlignments.Rd man/sequenceLayer.Rd man/setops-methods.Rd man/stackStringsFromBam.Rd man/summarizeOverlaps-methods.Rd
src/GenomicAlignments.h
src/IRanges_stubs.c
src/R_init_GenomicAlignments.c
src/S4Vectors_stubs.c
src/cigar_utils.c
src/coordinate_mapping_methods.c
src/encodeOverlaps_methods.c
tests/run_unitTests.R
vignettes/GenomicAlignmentsIntroduction.Rnw
vignettes/OverlapEncodings.Rnw
vignettes/WorkingWithAlignedNucleotides.Rnw
vignettes/precomputed_results/U1.sbcompHITSa.rda
vignettes/precomputed_results/U1.sbcompHITSb.rda
vignettes/precomputed_results/exbytx.rda
vignettes/summarizeOverlaps-modes.pdf
vignettes/summarizeOverlaps.Rnw
Bioconductor/GenomicAlignments documentation built on Nov. 5, 2018, 6:59 a.m.