rowLogSumExps: Accurately calculates the logarithm of the sum of...

In Bioconductor/MatrixGenerics: S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

Accurately calculates the logarithm of the sum of exponentials for each row (column) of a matrix-like object

Description

Accurately calculates the logarithm of the sum of exponentials for each row (column) of a matrix-like object.

Usage

rowLogSumExps(lx, rows = NULL, cols = NULL, na.rm = FALSE, ...,
  useNames = TRUE)

## S4 method for signature 'matrix_OR_array_OR_table_OR_numeric'
rowLogSumExps(lx,
  rows = NULL, cols = NULL, na.rm = FALSE, dim. = dim(lx), ...,
  useNames = TRUE)

## S4 method for signature 'ANY'
rowLogSumExps(lx, rows = NULL, cols = NULL,
  na.rm = FALSE, ..., useNames = TRUE)

colLogSumExps(lx, rows = NULL, cols = NULL, na.rm = FALSE, ...,
  useNames = TRUE)

## S4 method for signature 'matrix_OR_array_OR_table_OR_numeric'
colLogSumExps(lx,
  rows = NULL, cols = NULL, na.rm = FALSE, dim. = dim(lx), ...,
  useNames = TRUE)

## S4 method for signature 'ANY'
colLogSumExps(lx, rows = NULL, cols = NULL,
  na.rm = FALSE, ..., useNames = TRUE)

Arguments

lx	An NxK matrix-like object. Typically lx are log(x) values.
rows, cols	A vector indicating the subset (and/or columns) to operate over. If NULL, no subsetting is done.
na.rm	If TRUE, missing values (NA or NaN) are omitted from the calculations.
...	Additional arguments passed to specific methods.
useNames	If TRUE (default), names attributes of result are set. Else if FALSE, no naming support is done.
dim.	An integer vector of length two specifying the dimension of x, essential when x is a numeric vector. Note, that this is not a generic argument and not all methods need provide it.

Details

The S4 methods for x of type matrix, array, table, or numeric call matrixStats::rowLogSumExps / matrixStats::colLogSumExps.

Value

Returns a numeric vector of length N (K).

See Also

• matrixStats::rowLogSumExps() and matrixStats::colLogSumExps() which are used when the input is a matrix or numeric vector.

• rowSums2()

Examples

mat <- matrix(rnorm(15), nrow = 5, ncol = 3)
mat[2, 1] <- NA
mat[3, 3] <- Inf
mat[4, 1] <- 0

print(mat)

rowLogSumExps(mat)
colLogSumExps(mat)

Bioconductor/MatrixGenerics documentation built on April 19, 2024, 8:19 a.m.