MultiOmicQC-checkers: Check seqinfo consistency across ranged experiments
In Bioconductor/MultiOmicQC: Quality control for Multi-omics datasets

Description Usage Arguments checkSeqlengths checkSeqlevels checkSeqlevelsStyle

A set of functions to check several aspects of ranged experiments including seqlengths, seqlevels and seqlevelsStyle. These group of functions return a logical scalar value when the names, styles, etc. are consistent accross all experiments.

checkSeqlengths(x)

checkSeqlevels(x)

checkSeqlevelsStyle(x)

`x`	A MultiAssayExperiment

Runs and checks seqlengths on all ranged experiments.

Checks seqnames levels of all ranged experiments for consistency. Inconsistent seqlevels can be problematic when ranged experiments differ by annotations.

Checks all seqlevelsStyle of all ranged experiments by comparing the first style with the rest using the duplicated function.

Bioconductor/MultiOmicQC documentation built on May 22, 2019, 12:59 p.m.