API for Bioconductor/OrganismDbi
Software to enable the smooth interfacing of different database packages

Global functions
.bfs Source code
.biocAnnPackages Source code
.byToKeytype Source code
.cantFindResourceMsg Source code
.cds Source code
.cdsBy Source code
.cols Source code
.colsByNodes Source code
.combineMetadata Source code
.compressMetadata Source code
.dbconn Source code
.dbfile Source code
.exons Source code
.exonsBy Source code
.extractDbFiles Source code
.extractPkgsAndCols Source code
.genes Source code
.gentlyExtractDbFiles Source code
.getColsByNodes Source code
.getDbNameFKeys Source code
.getDbObjNames Source code
.getDbObjs Source code
.getForeignKeys Source code
.getKeyRowWithOrgDbAndTxDb Source code
.getMaxEns Source code
.getMetaDataValue Source code
.getOrgDbByClass Source code
.getRelevantSubgraph Source code
.getSelects Source code
.getTxDb Source code
.getTxDbByClass Source code
.hasSynonymousKeys Source code
.keys Source code
.keytypes Source code
.loadOrganismDbiPkg Source code
.lookupDbFromKeytype Source code
.lookupDbNameFromKeytype Source code
.makeReal Source code
.makekeytypeMapping Source code
.mergeSelectResults Source code
.mkeys Source code
.mungeGraphData Source code
.packageTaxIds Source code
.parseCol Source code
.resources Source code
.safelyGetTxDb Source code
.select Source code
.selectByRanges Source code
.selectRangesById Source code
.showGODb Source code
.showGeneralSubObject Source code
.showOrgDb Source code
.showOrganismDbSpecificItems Source code
.showTxDb Source code
.taxIdToOrgDb Source code
.taxIdToOrgDbName Source code
.taxonomyId Source code
.test Source code
.testGraphData Source code
.testKeys Source code
.transcripts Source code
.transcriptsBy Source code
.updateTxDb Source code
.updateTxDbSeqMultiDb Source code
MultiDb Man page Source code
MultiDb-class Man page
OrganismDb Man page Source code
OrganismDb-class Man page
TxDb Man page
TxDb,OrganismDb-method Man page
TxDb<- Man page
TxDb<-,OrganismDb-method Man page
asBED,MultiDb-method Man page
asGFF,MultiDb-method Man page
available.GTFsForTxDbs Source code
cds,MultiDb-method Man page
cdsBy,MultiDb-method Man page
class:MultiDb Man page
class:OrganismDb Man page
columns,MultiDb-method Man page
dbconn,MultiDb-method Man page
dbfile,MultiDb-method Man page
disjointExons,MultiDb-method Man page
distance,GenomicRanges,MultiDb-method Man page
exons,MultiDb-method Man page
exonsBy,MultiDb-method Man page
extractTranscriptSeqs,BSgenome-method Man page
extractUpstreamSeqs,MultiDb-method Man page
fiveUTRsByTranscript,MultiDb-method Man page
genes,MultiDb-method Man page
getTxDbIfAvailable Man page
getTxDbIfAvailable,MultiDb-method Man page
intronsByTranscript,MultiDb-method Man page
isActiveSeq,MultiDb-method Man page
isActiveSeq<-,MultiDb-method Man page
keys,MultiDb-method Man page
keytypes,MultiDb-method Man page
makeHubGTFIntoTxDb Source code
makeOrganismDbFromBiomart Man page Source code
makeOrganismDbFromTxDb Man page Source code
makeOrganismDbFromUCSC Man page Source code
makeOrganismPackage Man page Source code
makeOuterMcolFromInnerMcol Source code
mapIds,MultiDb-method Man page
mapToTranscripts,ANY,MultiDb-method Man page
metadata,MultiDb-method Man page
microRNAs,MultiDb-method Man page
promoters,MultiDb-method Man page
resources Man page
resources,MultiDb-method Man page
select,MultiDb-method Man page
selectByRanges Man page
selectByRanges,MultiDb-method Man page
selectRangesById Man page
selectRangesById,MultiDb-method Man page
seqinfo,MultiDb-method Man page
tRNAs,MultiDb-method Man page
taxonomyId,MultiDb-method Man page
threeUTRsByTranscript,MultiDb-method Man page
transcripts,MultiDb-method Man page
transcriptsBy,MultiDb-method Man page
Bioconductor/OrganismDbi documentation built on Aug. 17, 2019, 11:37 p.m.