compactAssay
(@csoneson, #30)citation(package = "RaggedExperiment")
colSums
from MatrixGenerics
in unit tests.as.list
and as.data.frame
methods to RaggedExperiment
to facilitate
extraction of mcols
and conversion to table format, respectively.dgCMatrix
type can now be coerced to RaggedExperiment
when rownames
are coercible to GRanges
mcols
after coercion
from dgCMatrix
sparseAssay
and compactAssay
now support sparseMatrix
outputs from the
Matrix
packageMatrixGenerics
(new location of the
rowRanges
generic)SummarizedExperiment::assay
(withDimnames
argument)simplifyTCGA
helper function from TCGAutils
in examplesqreduceAssay
example and include alternative
qreduceTCGA
exampleTCGAutils
functions for qreduceAssay
examplesRaggedExperiment
constructor including unit testsRaggedExperiment
vignette now available.Bioconductor/Contributions
issue trackerRaggedExperiment
class and basic methods: subsetting, dimnames, etc.RaggedExperiment
to SummarizedExperiment
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