Bioconductor/SparseArray
High-performance sparse data representation and manipulation in R

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Bioconductor/SparseArray: High-performance sparse data representation and manipulation in R
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API for Bioconductor/SparseArray
High-performance sparse data representation and manipulation in R

Global functions
!,SparseArray-method Man page
%*% Man page
%*%,ANY,SparseMatrix-method Man page
%*%,SparseMatrix,ANY-method Man page
%*%,SparseMatrix,SparseMatrix-method Man page
%*%,SparseMatrix,matrix-method Man page
%*%,matrix,SparseMatrix-method Man page
+,SparseArray,missing-method Man page
-,SparseArray,missing-method Man page
.Arith_SVT1_SVT2 Source code
.Arith_SVT1_v2 Source code
.Compare_SVT1_SVT2 Source code
.Compare_SVT1_v2 Source code
.Logic_SVT1_SVT2 Source code
.Logic_SVT1_v2 Source code
.Math2_SVT Source code
.Math_SVT Source code
.SVT_SparseArray Source code
.SVT_SparseArray_Complex Source code
.abind_COO_SparseArray_objects Source code
.abind_SparseArray_objects Source code
.adjust_left_type Source code
.anyNA_SparseArray Source code
.aperm_COO Source code
.aperm_SVT Source code
.bind_mins_maxs Source code
.build_SVT_SparseArray_from_COO_SparseArray Source code
.build_SVT_SparseArray_from_array Source code
.build_SVT_SparseMatrix_from_CsparseMatrix Source code
.check_Arith_input_type Source code
.check_Compare_input_type Source code
.check_Compare_op_on_complex_vals Source code
.check_Logic_input_type Source code
.check_Math_op Source code
.check_crossprod_input_type Source code
.check_dims Source code
.check_rows_cols Source code
.check_unused_arguments Source code
.colAlls_SparseArray Source code
.colAnyNAs_SparseArray Source code
.colAnys_SparseArray Source code
.colCountNAs_SVT_SparseMatrix Source code
.colMaxs_SparseArray Source code
.colMeans2_SparseArray Source code
.colMeans_SparseArray Source code
.colMedians_SVT_SparseMatrix Source code
.colMins_SparseArray Source code
.colProds_SparseArray Source code
.colRanges_SparseArray Source code
.colSds_SparseArray Source code
.colStats_SparseArray Source code
.colSums2_SparseArray Source code
.colSums_SparseArray Source code
.colVars_SparseArray Source code
.colVars_SparseArray_SparseMatrix Source code
.contact_author_msg2 Source code
.countNAs_SparseArray Source code
.crossprod1_SparseMatrix Source code
.crossprod2_SparseMatrix_SparseMatrix Source code
.crossprod2_SparseMatrix_matrix Source code
.crossprod2_matrix_SparseMatrix Source code
.default_SparseArray_nthread Source code
.dense2sparse Source code
.error_on_sparsity_not_preserved Source code
.extract_COO_SparseArray_subset Source code
.extract_array_from_COO_SparseArray Source code
.flip_Compare_op Source code
.from_Array_to_sparseMatrix Source code
.from_COO_SparseMatrix_to_dgCMatrix Source code
.from_COO_SparseMatrix_to_dgRMatrix Source code
.from_COO_SparseMatrix_to_lgCMatrix Source code
.from_COO_SparseMatrix_to_lgRMatrix Source code
.from_SVT_SparseArray_to_COO_SparseArray Source code
.from_SVT_SparseArray_to_array Source code
.from_SVT_SparseMatrix_to_dgCMatrix Source code
.from_SVT_SparseMatrix_to_lgCMatrix Source code
.from_SVT_SparseMatrix_to_ngCMatrix Source code
.get_SVT_SparseArray_nzcount Source code
.get_SparseArray_options Source code
.get_max_threads Source code
.get_num_procs Source code
.guess_dimnames_and_ncol Source code
.infer_sparseMatrix_type_from_input_type Source code
.isFUN_SVT Source code
.isoFUN_COO Source code
.looks_like_a_name Source code
.make_COO_SparseMatrix_from_dgCMatrix_or_lgCMatrix Source code
.make_COO_SparseMatrix_from_dgRMatrix_or_lgRMatrix Source code
.make_CsparseMatrix_from_SVT_SparseMatrix Source code
.make_sparseMatrix_from_COO_SparseMatrix Source code
.mean_SparseArray Source code
.must_homogenize_for_Compare Source code
.new_empty_SVT_SparseArray Source code
.normalize_COO_SparseArray Source code
.normalize_right_value Source code
.normarg_center Source code
.normarg_dims Source code
.normarg_nthread Source code
.normarg_nzdata Source code
.normarg_useNames Source code
.nzwhich_COO_SparseArray Source code
.nzwhich_SVT_SparseArray Source code
.onLoad Source code
.onUnload Source code
.op_is_commutative Source code
.order_nzcoo_slot Source code
.padded_median Source code
.padded_var Source code
.pmax2 Source code
.pmin2 Source code
.pminmax2 Source code
.positive_padded_median Source code
.propagate_names_if_1D Source code
.psummarize Source code
.readSparseCSV_as_SVT_SparseMatrix Source code
.remove_zeros_from_nzdata_slot Source code
.rowAlls_SparseArray Source code
.rowAnyNAs_SparseArray Source code
.rowAnys_SparseArray Source code
.rowCountNAs_SVT_SparseMatrix Source code
.rowMaxs_SparseArray Source code
.rowMeans2_SparseArray Source code
.rowMeans_SparseArray Source code
.rowMins_SparseArray Source code
.rowProds_SparseArray Source code
.rowRanges_SparseArray Source code
.rowSds_SparseArray Source code
.rowStats_SparseArray Source code
.rowSums2_SparseArray Source code
.rowSums_SparseArray Source code
.rowVars_SparseArray Source code
.rowsum_method Source code
.scan_first_two_lines Source code
.set_COO_SparseArray_type Source code
.set_SVT_SparseArray_type Source code
.set_max_threads Source code
.show_headline_part1 Source code
.show_headline_part2 Source code
.sparse2dense Source code
.sparse_rpois Source code
.stopifnot_2D_object Source code
.subassign_SVT_SparseArray Source code
.subassign_SVT_by_Lindex Source code
.subassign_SVT_by_Mindex Source code
.subassign_SVT_by_Nindex Source code
.subassign_SVT_by_logical_array Source code
.subassign_SVT_with_Rarray Source code
.subassign_SVT_with_SVT Source code
.subassign_SVT_with_short_Rvector Source code
.subset_SVT_SparseArray Source code
.subset_SVT_by_Lindex Source code
.subset_SVT_by_Mindex Source code
.subset_SVT_by_logical_array Source code
.summarize_COO Source code
.summarize_SVT Source code
.tune_SVT_SparseArray_dims Source code
.unary_minus_SparseArray Source code
.unary_plus_SparseArray Source code
.validate_COO_SparseArray Source code
.validate_SparseArray Source code
.validate_SparseMatrix Source code
.validate_nzcoo_slot Source code
.validate_nzdata_slot Source code
.write_csv_block Source code
.write_csv_line Source code
Arith,SVT_SparseArray,SVT_SparseArray-method Man page
Arith,SVT_SparseArray,array-method Man page
Arith,SVT_SparseArray,vector-method Man page
Arith,array,SVT_SparseArray-method Man page
Arith,vector,SVT_SparseArray-method Man page
COO_SparseArray Man page Source code
COO_SparseArray-class Man page
COO_SparseMatrix Man page
COO_SparseMatrix-class Man page
Compare,SVT_SparseArray,SVT_SparseArray-method Man page
Compare,SVT_SparseArray,array-method Man page
Compare,SVT_SparseArray,vector-method Man page
Compare,array,SVT_SparseArray-method Man page
Compare,vector,SVT_SparseArray-method Man page
Complex,SVT_SparseArray-method Man page
CsparseMatrix Source code
Logic,SVT_SparseArray,SVT_SparseArray-method Man page
Logic,SVT_SparseArray,array-method Man page
Logic,SVT_SparseArray,vector-method Man page
Logic,array,SVT_SparseArray-method Man page
Logic,vector,SVT_SparseArray-method Man page
Math,SVT_SparseArray-method Man page
NULL_OR_list Man page
NULL_OR_list-class Man page
RsparseMatrix Source code
SVT_SparseArray Man page Source code
SVT_SparseArray-class Man page
SVT_SparseMatrix Man page
SVT_SparseMatrix-class Man page
SparseArray Man page Source code
SparseArray-Arith Man page
SparseArray-Compare Man page
SparseArray-Complex Man page
SparseArray-Complex-methods Man page
SparseArray-Logic Man page
SparseArray-Math Man page
SparseArray-Math-methods Man page
SparseArray-Math2 Man page
SparseArray-Math2-methods Man page
SparseArray-Ops Man page
SparseArray-Ops-methods Man page
SparseArray-abind Man page
SparseArray-aperm Man page
SparseArray-class Man page
SparseArray-combine Man page
SparseArray-dim-tuning Man page
SparseArray-ineffective-dims Man page
SparseArray-misc Man page
SparseArray-misc-methods Man page
SparseArray-subassignment Man page
SparseArray-subsetting Man page
SparseArray-summarization Man page
SparseArray-transposition Man page
SparseArray.Call Source code
SparseArray_Arith Man page
SparseArray_Compare Man page
SparseArray_Complex Man page
SparseArray_Complex_methods Man page
SparseArray_Logic Man page
SparseArray_Math Man page
SparseArray_Math2 Man page
SparseArray_Math2_methods Man page
SparseArray_Math_methods Man page
SparseArray_Ops Man page
SparseArray_Ops_methods Man page
SparseArray_abind Man page
SparseArray_aperm Man page
SparseArray_combine Man page
SparseArray_dim_tuning Man page
SparseArray_ineffective_dims Man page
SparseArray_misc Man page
SparseArray_misc_methods Man page
SparseArray_option_is_set Source code
SparseArray_subassignment Man page
SparseArray_subsetting Man page
SparseArray_summarization Man page
SparseArray_transposition Man page
SparseMatrix Man page
SparseMatrix-class Man page
SparseMatrix-mult Man page
SparseMatrix_mult Man page
[,SVT_SparseArray,ANY,ANY,ANY-method Man page
[<-,SVT_SparseArray,ANY,ANY,ANY-method Man page
abind,SparseArray-method Man page
abind_SVT_SparseArray_objects Source code
anyNA,SparseArray-method Man page
aperm,COO_SparseArray-method Man page
aperm,SVT_SparseArray-method Man page
aperm.COO_SparseArray Man page Source code
aperm.SVT_SparseArray Man page Source code
as.array,COO_SparseArray-method Man page
as.array,SVT_SparseArray-method Man page
as.array.COO_SparseArray Man page Source code
as.array.SVT_SparseArray Man page Source code
bindROWS,SparseArray-method Man page
cbind,SparseArray-method Man page
check_returned_SparseArray Source code
check_svt_version Source code
class:COO_SparseArray Man page
class:COO_SparseMatrix Man page
class:NULL_OR_list Man page
class:SVT_SparseArray Man page
class:SVT_SparseMatrix Man page
class:SparseArray Man page
class:SparseMatrix Man page
coerce,ANY,COO_SparseArray-method Man page
coerce,ANY,COO_SparseMatrix-method Man page
coerce,ANY,SparseArray-method Man page
coerce,ANY,SparseMatrix-method Man page
coerce,Array,CsparseMatrix-method Man page
coerce,Array,RsparseMatrix-method Man page
coerce,Array,dgCMatrix-method Man page
coerce,Array,dgRMatrix-method Man page
coerce,Array,lgCMatrix-method Man page
coerce,Array,lgRMatrix-method Man page
coerce,Array,ngCMatrix-method Man page
coerce,Array,ngRMatrix-method Man page
coerce,Array,sparseMatrix-method Man page
coerce,COO_SparseArray,COO_SparseMatrix-method Man page
coerce,COO_SparseArray,SVT_SparseArray-method Man page
coerce,COO_SparseMatrix,COO_SparseArray-method Man page
coerce,COO_SparseMatrix,SVT_SparseMatrix-method Man page
coerce,COO_SparseMatrix,SparseArray-method Man page
coerce,COO_SparseMatrix,dgCMatrix-method Man page
coerce,COO_SparseMatrix,dgRMatrix-method Man page
coerce,COO_SparseMatrix,lgCMatrix-method Man page
coerce,COO_SparseMatrix,lgRMatrix-method Man page
coerce,CsparseMatrix,SVT_SparseMatrix-method Man page
coerce,Matrix,COO_SparseArray-method Man page
coerce,Matrix,SVT_SparseArray-method Man page
coerce,RsparseMatrix,SparseArray-method Man page
coerce,RsparseMatrix,SparseMatrix-method Man page
coerce,SVT_SparseArray,COO_SparseArray-method Man page
coerce,SVT_SparseArray,SVT_SparseMatrix-method Man page
coerce,SVT_SparseMatrix,COO_SparseMatrix-method Man page
coerce,SVT_SparseMatrix,SVT_SparseArray-method Man page
coerce,SVT_SparseMatrix,SparseArray-method Man page
coerce,SVT_SparseMatrix,dgCMatrix-method Man page
coerce,SVT_SparseMatrix,lgCMatrix-method Man page
coerce,SVT_SparseMatrix,ngCMatrix-method Man page
coerce,array,SVT_SparseArray-method Man page
coerce,dgCMatrix,COO_SparseMatrix-method Man page
coerce,dgCMatrix,ngCMatrix-method Man page
coerce,dgRMatrix,COO_SparseMatrix-method Man page
coerce,lgCMatrix,COO_SparseMatrix-method Man page
coerce,lgRMatrix,COO_SparseMatrix-method Man page
coerce,matrix,SVT_SparseMatrix-method Man page
coerce,matrix,dgRMatrix-method Man page
coerce,matrix,lgCMatrix-method Man page
coerce,matrix,lgRMatrix-method Man page
coerce,matrix,ngCMatrix-method Man page
coerce,matrix,ngRMatrix-method Man page
coercion_can_introduce_zeros Source code
colAlls Man page
colAlls,SparseArray-method Man page
colAnyNAs Man page
colAnyNAs,SparseArray-method Man page
colAnys Man page
colAnys,SparseArray-method Man page
colMaxs Man page
colMaxs,SparseArray-method Man page
colMeans Man page
colMeans,SparseArray-method Man page
colMeans2 Man page
colMeans2,SparseArray-method Man page
colMedians Man page
colMedians,SparseArray-method Man page
colMins Man page
colMins,SparseArray-method Man page
colProds Man page
colProds,SparseArray-method Man page
colRanges Man page
colRanges,SparseArray-method Man page
colSds Man page
colSds,SparseArray-method Man page
colSums Man page
colSums,SparseArray-method Man page
colSums2 Man page
colSums2,SparseArray-method Man page
colVars Man page
colVars,SparseArray-method Man page
colVars_dgCMatrix Source code
crossprod Man page
crossprod,ANY,SparseMatrix-method Man page
crossprod,SparseMatrix,ANY-method Man page
crossprod,SparseMatrix,SparseMatrix-method Man page
crossprod,SparseMatrix,matrix-method Man page
crossprod,SparseMatrix,missing-method Man page
crossprod,matrix,SparseMatrix-method Man page
default_nzwhich Source code
dim,SparseArray-method Man page
dim-tuning Man page
dim<- Man page
dim_tuning Man page
dimnames,SparseArray-method Man page
dimnames<-,SparseArray,ANY-method Man page
drop Man page
extract_array,COO_SparseArray-method Man page
extract_array,SVT_SparseArray-method Man page
extract_sparse_array Man page
extract_sparse_array,ANY-method Man page
extract_sparse_array,COO_SparseArray-method Man page
extract_sparse_array,SVT_SparseArray-method Man page
free_global_OPBufTree Source code
get_SparseArray_nthread Man page Source code
get_SparseArray_option Source code
ineffective-dims Man page
ineffective_dims Man page
is.infinite Man page
is.infinite,COO_SparseArray-method Man page
is.infinite,SVT_SparseArray-method Man page
is.na Man page
is.na,COO_SparseArray-method Man page
is.na,SVT_SparseArray-method Man page
is.nan Man page
is.nan,COO_SparseArray-method Man page
is.nan,SVT_SparseArray-method Man page
is_sparse,SparseArray-method Man page
lacunar_mode_is_on Source code
make_SVT_SparseMatrix_from_CSC Source code
matrixStats-methods Man page
matrixStats_methods Man page
mean,SparseArray-method Man page
mean.SparseArray Source code
nchar Man page
nchar,COO_SparseArray-method Man page
new_COO_SparseArray Source code
new_CsparseMatrix Source code
new_RsparseMatrix Source code
new_SVT_SparseArray Source code
nzcoo Man page
nzcoo,COO_SparseArray-method Man page
nzcount Man page
nzcount,COO_SparseArray-method Man page
nzcount,CsparseMatrix-method Man page
nzcount,RsparseMatrix-method Man page
nzcount,SVT_SparseArray-method Man page
nzdata Man page
nzdata,COO_SparseArray-method Man page
nzvals Man page
nzvals,ANY-method Man page
nzvals,COO_SparseArray-method Man page
nzvals,dgCMatrix-method Man page
nzvals,lgCMatrix-method Man page
nzvals,ngCMatrix-method Man page
nzvals,ngRMatrix-method Man page
nzvals<- Man page
nzvals<-,ANY-method Man page
nzvals<-,COO_SparseArray-method Man page
nzwhich Man page
nzwhich,ANY-method Man page
nzwhich,COO_SparseArray-method Man page
nzwhich,CsparseMatrix-method Man page
nzwhich,RsparseMatrix-method Man page
nzwhich,SVT_SparseArray-method Man page
nzwhich_CsparseMatrix Source code
nzwhich_RsparseMatrix Source code
pmax Man page
pmax,SparseArray-method Man page
pmin Man page
pmin,SparseArray-method Man page
poissonSparseArray Man page Source code
poissonSparseArray2 Source code
poissonSparseMatrix Man page Source code
randomSparseArray Man page Source code
randomSparseMatrix Man page Source code
range,COO_SparseArray-method Man page
range,SVT_SparseArray-method Man page
range.COO_SparseArray Man page Source code
range.SVT_SparseArray Man page Source code
rbind,SparseArray-method Man page
readSparseCSV Man page Source code
readSparseTable Man page Source code
read_block_as_sparse Man page
read_block_as_sparse,ANY-method Man page
round,SVT_SparseArray-method Man page
rowAlls Man page
rowAlls,SparseArray-method Man page
rowAnyNAs Man page
rowAnyNAs,SparseArray-method Man page
rowAnys Man page
rowAnys,SparseArray-method Man page
rowMaxs Man page
rowMaxs,SparseArray-method Man page
rowMeans Man page
rowMeans,SparseArray-method Man page
rowMeans2 Man page
rowMeans2,SparseArray-method Man page
rowMedians Man page
rowMedians,SparseArray-method Man page
rowMins Man page
rowMins,SparseArray-method Man page
rowProds Man page
rowProds,SparseArray-method Man page
rowRanges Man page
rowRanges,SparseArray-method Man page
rowSds Man page
rowSds,SparseArray-method Man page
rowSums Man page
rowSums,SparseArray-method Man page
rowSums2 Man page
rowSums2,SparseArray-method Man page
rowVars Man page
rowVars,SparseArray-method Man page
rowsum Man page
rowsum,SparseMatrix-method Man page
rowsum,dgCMatrix-method Man page
rowsum-methods Man page
rowsum.SparseMatrix Man page Source code
rowsum.dgCMatrix Man page
rowsum_methods Man page
sd,SparseArray-method Man page
set_SparseArray_nthread Man page Source code
set_SparseArray_option Source code
show,SparseArray-method Man page
signif,SVT_SparseArray-method Man page
simple_rpois Source code
sparseMatrix-utils Man page
sparseMatrix_utils Man page
sparsity Man page Source code
subset_SVT_by_Nindex Source code
svt_version Source code
t,SVT_SparseMatrix-method Man page
t.SVT_SparseMatrix Man page Source code
tcrossprod Man page
tcrossprod,ANY,SparseMatrix-method Man page
tcrossprod,SparseMatrix,ANY-method Man page
tcrossprod,SparseMatrix,SparseMatrix-method Man page
tcrossprod,SparseMatrix,matrix-method Man page
tcrossprod,SparseMatrix,missing-method Man page
tcrossprod,matrix,SparseMatrix-method Man page
test Source code
thread-control Man page
thread_control Man page
tolower Man page
tolower,COO_SparseArray-method Man page
toupper Man page
toupper,COO_SparseArray-method Man page
type,COO_SparseArray-method Man page
type,SVT_SparseArray-method Man page
type<-,COO_SparseArray-method Man page
type<-,SVT_SparseArray-method Man page
var,SparseArray,ANY-method Man page
writeSparseCSV Man page Source code
Bioconductor/SparseArray documentation built on July 17, 2024, 6:06 a.m.

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