affy.scalevalue.exprSet: Scale normalization for expreSets
In Bioconductor/affy: Methods for Affymetrix Oligonucleotide Arrays
View source: R/generateExprVal.method.mas.R
affy.scalevalue.exprSet R Documentation
Scale normalization for expreSets
Description
Normalizes expression values using the method described in the Affymetrix
user manual.
Usage
affy.scalevalue.exprSet(eset, sc = 500, analysis="absolute")
Arguments
eset
An ExpressionSet
object.
sc
Value at which all arrays will be scaled to.
analysis
Should we do absolute or comparison analysis, although
"comparison" is still not implemented.
Details
This is function was implemented from the Affymetrix technical
documentation for MAS 5.0. It can be downloaded from the website of
the company. Please refer to this document for details.
Value
A normalized ExpressionSet.
Author(s)
Laurent
Bioconductor/affy documentation built on July 21, 2023, 5:23 p.m.
R Package Documentation
Browse R Packages
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/generateExprVal.method.mas.R
| affy.scalevalue.exprSet | R Documentation |
Scale normalization for expreSets
Description
Normalizes expression values using the method described in the Affymetrix user manual.
Usage
affy.scalevalue.exprSet(eset, sc = 500, analysis="absolute")
Arguments
eset |
An |
sc |
Value at which all arrays will be scaled to. |
analysis |
Should we do absolute or comparison analysis, although "comparison" is still not implemented. |
Details
This is function was implemented from the Affymetrix technical documentation for MAS 5.0. It can be downloaded from the website of the company. Please refer to this document for details.
Value
A normalized ExpressionSet.
Author(s)
Laurent
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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