summary: Repository summary statistics
In Bioconductor/hca: Exploring the Human Cell Atlas Data Coordinating Platform

summary

R Documentation

Repository summary statistics

Description

summary() provides numerical summaries of catalog content

Usage

summary(
  filters = NULL,
  type = c("overview", "fileTypeSummaries", "cellCountSummaries", "organTypes", "list"),
  catalog = NULL
)

Arguments

`filters`	filter object created by `filters()`, or `NULL` (default; all projects).
`type`	character(1) type of summary to return. Possible values include "overview", "fileTypeSummaries", "cellCountSummaries", "organType", and a "list" off all summary statistics.
`catalog`	character(1) source of data. Use `catalogs()` for possible values.

Value

summary() returns a tibble or (for type = "list") a list-of-lists of summary statistics.

Examples

hca::summary()

filter <- filters(
    organ = list(is = c("brain", "heart")),
    genusSpecies = list(is = "Homo sapiens")
)
hca::summary(filter)
hca::summary(filter, "fileTypeSummaries")
hca::summary(filter, "cellCountSummaries")

Bioconductor/hca documentation built on May 3, 2024, 1:49 p.m.