Man pages for Bioconductor/ppiStats
Protein-Protein Interaction Statistical Package
| assessSymmetry | A function that calcualtes some directed degree statistics on... |
| bpMatrix | This function generates the Bait-Prey Matrix for an... |
| calcInOutDegStats | This function calculates the various degree statistic for a... |
| createSummaryTables | A function to create summary statistic tables for directed... |
| degreeEstimates | Estimate per-node degree in viable bait-prey (VBP) graph... |
| estErrProbMethodOfMoments | Estimate false positive and false negative error... |
| estimateCCMErrorRates | Estimate false positive and false negative error... |
| estimatePPIErrorRates | Estimate false positive and false negative error... |
| findAdjacent | A function that returns the set of prey detected by a bait in... |
| genBPGraph | A function to generate the protein-protein interaction (ppi)... |
| hgParams | A wrapper function to build a parameter class for the input... |
| hgTests | A wrapper function to implement the Hypergeometric test,... |
| idProteinErrorType | A function to identify those proteins affected by either... |
| idProteinType | A function to determine viable baits, viable preys, or... |
| inOutScatterCharts | A function to create scatter plots of the in-degree and... |
| nullDistDoublyTestedEdges | Null distribution of number of reciprocated, unreciprocated... |
| separateExptBySize | A function to partition experiments in user defined small,... |
| twPERM | A function to compute a permutation test on a two way table.h |
| viabilityCharts | A function to create summary bar charts for directed graphs |
