createSummaryTables: A function to create summary statistic tables for directed...

In Bioconductor/ppiStats: Protein-Protein Interaction Statistical Package

Description

This function takes a list of directed graph objects and creates a summary table based on the directed connectivity.

Usage

createSummaryTables(dataGraphs)

Arguments

dataGraphs

A named list of directed graphNELs

Value

A dataframe with the rows indexed by the names of each directed graphNEL and the columns indexed by viable baits (VB), viable prey (VP), viable bait/prey (VBP), the ratio of viable bait/prey by viable baits (VBP/VB), the ratio of viable prey by viable baits (VP/VB), the total number of directed interactions (TI), and the ratio of total intractions by viable baits (TI/VB).

Author(s)

T Chiang

Examples

data("bpExperimentNames", package = "ppiData")
graphs <- new.env(parent = emptyenv())
data(list = bpExperimentNames, package = "ppiData", envir = graphs)
graphs <- lapply(bpExperimentNames, function(x) graphs[[x]])
names(graphs) <- bpExperimentNames
createSummaryTables(graphs)

Bioconductor/ppiStats documentation built on Nov. 1, 2021, 1:24 a.m.