Man pages for BioinformaticsFMRP/TCGAWorkflowData
Data for TCGA Workflow
| cnvMatrix | CNV data for 20 TCGA-GBM samples |
| exp | A gene expression matrix for 10 GBM and 10 LGG samples... |
| exp.elmer | A gene expression matrix for 10 GBM and 10 LGG samples... |
| gbm.exp | A gene expression matrix wih 20 GBM samples |
| GBMmut | GBM GDC maf files for Somatic Mutation Calling Workflow... |
| gbm.samples | Identifiers for the 10 GBM samples in the ELMER objects |
| genes | A data frame object with gene information (hg19) |
| genes_GR | A GRanges object with gene information (hg19) |
| gistic.allbygene | A subset of GBM GISTIC2 results, which is used to identify... |
| gistic.thresholedbygene | A subset of GBM GISTIC2 results, which is used to identify... |
| histone.marks | histone marks specific for brain tissue from the Roadmap... |
| lgg.exp | A gene expression matrix wih 20 LGG samples |
| LGGmut | LGG GDC maf files for Somatic Mutation Calling Workflow... |
| lgg.samples | Identifiers for the 10 LGG samples in the ELMER objects |
| markersMatrix | Probes meta file from broadinstitute website for Copy Number... |
| met | A SummarizedExperiment containing TCGA data: DNA methylation... |
| met.elmer | A DNA methylation matrix for 10 GBM and 10 LGG samples... |
| mut | Merged LGG and GBM GDC maf files for Somatic Mutation Calling... |
| TCGAWorkflowData | Data for TCGA Workflow |
| tmp.biogrid | Biogrid information |
