In Blue-Matter/MSEtool: Management Strategy Evaluation Toolkit

if (params$tabs) {
  cat('### Recruitment Parameters {.tabset .tabset-fade .tabset-pills}' )
} else {
  cat('### Recruitment Parameters')
}

dd <- params$Pars$Stock$M_ageArray %>% dim()
nsim <- dd[1]
maxage <- dd[2]

nsamp <- length(params$its)

if (Pars$Stock$SRrel[1] == 1) SR <- "Beverton-Holt"
if (Pars$Stock$SRrel[1] == 2) SR <- "Ricker"

Sampled Parameters

Histograms of r nsim simulations of steepness (h), recruitment process error (Perr) and auto-correlation (AC) for the r SR stock-recruitment relationship, with vertical colored lines indicating r nsamp randomly drawn values used in other plots:

MSEtool:::plot.Recruitment(params$Pars, nsamp=nsamp, plotPars=params$plotPars, plot.num=1)

Time-Series

Time-series plot showing r nsamp samples of recruitment deviations for historical and projection years:

MSEtool:::plot.Recruitment(params$Pars, nsamp=nsamp, plotPars=params$plotPars, plot.num=2)

Blue-Matter/MSEtool documentation built on April 25, 2024, 12:30 p.m.