MSEtool: Management Strategy Evaluation Toolkit

Pplot2

R Documentation

A projection by projection plot of F/FMSY, B/BMSY, B/B0, and yield

Description

A projection by projection plot of F/FMSY, B/BMSY, B/B0, and yield

Usage

Pplot2(
  MSEobj,
  YVar = c("F_FMSY", "SSB_SSBMSY"),
  MPs = NA,
  sims = NULL,
  traj = c("all", "quant", "both"),
  quants = c(0.1, 0.9),
  incquant = TRUE,
  quantcol = "lightgray",
  RefYield = c("lto", "curr"),
  LastYr = TRUE,
  ref.lines = c(0.5, 1, 1.5),
  maxMP = 6,
  alpha = 60,
  cex.axis = 1,
  cex.lab = 1,
  YLab = NULL,
  incMP = TRUE,
  MPcex = 1,
  MPcol = "black",
  incLeg = TRUE,
  cex.leg = 1.5,
  legPos = "topleft",
  yline = NULL,
  xline = NULL,
  parOR = FALSE,
  xaxis = TRUE,
  yaxis = TRUE,
  oneIt = TRUE,
  ...
)

Arguments

`MSEobj`	An object of class MSE
`YVar`	What to plot on the y-axis? Options are: `c('SSB_SSB0', 'SSB_SSBMSY', 'F_FMSY', 'Yield')`
`MPs`	Optional subset by MP
`sims`	Optional subset by simulation
`traj`	Plot all projections (`all`), only quantiles (`quant`), or both projections and median (`both`)
`quants`	Numeric vector of length 2 specifying the quantiles (e.g., 10th and 90th. Median is always included)
`incquant`	Logical. Include the quantiles or only plot median?
`quantcol`	Colour of the quantile polygon
`RefYield`	Should yield be relative to long-term optimum (`lto`) or last historical year (`curr`)
`LastYr`	Logical. Include the last historical year in the yield projections?
`ref.lines`	Numeric vector of y-values for horizontal reference lines. Set to NULL to remove lines.
`maxMP`	Maximum number of MPs to plot
`alpha`	Alpha for transparency of lines
`cex.axis`	Size of axis text
`cex.lab`	Size of axis label
`YLab`	Optional label for y-axis
`incMP`	Logical. Include name of MP?
`MPcex`	Size of MP label
`MPcol`	Optional character vector of colors for MP labels
`incLeg`	Logical. Include a legend?
`cex.leg`	Size of legend text
`legPos`	Legend position
`yline`	Optional horizontal lines
`xline`	Optional vertical lines
`parOR`	Logical to over-ride the par parameters
`xaxis`	Logical. Should x-axis labels be displayed?
`yaxis`	Logical. Should y-axis labels be displayed?
`oneIt`	Logical. Should one iteration be plotted on the quantile plot?
`...`	Additional arguments to be passed to plotting functions