TradePlot: Generic Trade-Plot Function

In Blue-Matter/MSEtool: Management Strategy Evaluation Toolkit

Generic Trade-Plot Function

Description

Generic Trade-Plot Function

Usage

TradePlot(
  MSEobj,
  ...,
  Lims = c(0.2, 0.2, 0.8, 0.8),
  Title = NULL,
  Labels = NULL,
  Satisficed = FALSE,
  Show = "both",
  point.size = 2,
  lab.size = 4,
  axis.title.size = 12,
  axis.text.size = 10,
  legend = TRUE,
  legend.title.size = 12,
  position = c("right", "bottom"),
  cols = NULL,
  fill = "gray80",
  alpha = 0.4,
  PMlist = NULL,
  Refs = NULL,
  Yrs = NULL
)

Tplot(MSEobj, Lims = c(0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5, 0.5), ...)

Tplot2(MSEobj, Lims = c(0.2, 0.2, 0.8, 0.8), ...)

Tplot3(MSEobj, Lims = c(0.5, 0.5, 0.8, 0.5), ...)

NOAA_plot2(MSEobj)

Arguments

MSEobj	An object of class MSE
...	Names of Performance Metrics (PMs), or other arguments to TradePlot. First PM is recycled if number of PMs is not even
Lims	A numeric vector of acceptable risk/minimum probability thresholds. Recycled if not equal to number of PMs.
Title	Optional title for each plot. Character vector of length(PMs)/2. Recycled.
Labels	Optional named list specifying new labels for MPs. For example: Labels = list(AvC="Average Catch", CC1="Constant Catch")
Satisficed	Logical. Show only the MPs that meet minimum acceptable thresholds (specified in Lims)
Show	Character. Show the plots ('plots'), results table ('table'), 'both' (default), or invisibly return objects only ('none')
point.size	Numeric. Size of the MP points
lab.size	Numeric. Size of MP label. Set to NULL to remove MP labels.
axis.title.size	Numeric. Size of axis titles
axis.text.size	Numeric. Size of axis text
legend	Logical. Include legend?
legend.title.size	Numeric. Size of legend title text
position	Character. Position of legend - 'right' or 'bottom'
cols	Optional character vector of colors for the legend (MP Types) or if cols is a character vector of length MSEobj@nMPs, then the MP labels are colored (no color legend).
fill	Character. Color of the fill
alpha	Numeric. Transparency of fill
PMlist	Optional list of PM names. Overrides any supplied in ... above
Refs	An optional named list (matching the PM names) with numeric values to override the default Ref values. See examples.
Yrs	An optional named list (matching the PM names) with numeric values to override the default Yrs values. See examples.

Value

Invisibly returns a list with summary table of MP performance and the ggplot objects for the plots

Functions

• Tplot(): A trade-off plot showing probabilities that:

  • not overfishing (PNOF) against long-term yield is > 50\

  • spawning biomass is below BMSY (P100) against LTY

  • spawning biomass is below 0.5BMSY (P50) against LTY

  • spawning biomass is below 0.1BMSY (P10) against LTY

• Tplot2(): A trade-off plot showing probabilities that:

  • short-term yield is > 50\

  • spawning biomass is below 0.1BMSY (P10) against average annual variability in yield is < 20\

• Tplot3(): A trade-off plot showing probabilities that:

  • not overfishing (PNOF) against long-term yield is > 50\

  • spawning biomass is below 0.1BMSY (P10) against average annual variability in yield is < 20\

• NOAA_plot2(): A trade-off plot developed for NOAA showing probabilities that:

  • not overfishing (PNOF) against long-term yield is > 50\

  • spawning biomass is below 0.5BMSY (P50) against average annual variability in yield is < 15\

Author(s)

A. Hordyk

Blue-Matter/MSEtool documentation built on Nov. 22, 2024, 8:23 p.m.