genSizeCompWrap: Wrapper for C++ function to generate length composition

In Blue-Matter/MSEtool: Management Strategy Evaluation Toolkit

Wrapper for C++ function to generate length composition

Description

And other internal related functions

Usage

genSizeCompWrap(
  i,
  vn,
  CAL_binsmid,
  CAL_bins,
  retL,
  CAL_ESS,
  CAL_nsamp,
  Linfarray,
  Karray,
  t0array,
  LenCV,
  truncSD = 2
)

getfifth(lenvec, CAL_binsmid)

Arguments

i	Simulation number
vn	Array of vulnerable numbers
CAL_binsmid	Mid-points of CAL bins
CAL_bins	Boundary of length bins
retL	Array of retention-at-length
CAL_ESS	CAL effective sample size
CAL_nsamp	CAL sample size
Linfarray	Matrix of Linf
Karray	Matrix of K values
t0array	Matrix of t0 values
LenCV	Vector of LenCV
truncSD	Numeric. Number of standard deviations to truncate normal d distribution
lenvec	Vector of lengths

Value

Generated length composition from genSizeComp

Functions

• getfifth(): Internal function to calculate fifth percentile of size composition

Blue-Matter/MSEtool documentation built on Nov. 22, 2024, 8:23 p.m.