Files in BodenmillerGroup/SingleCellMapper
Visualization of highly multiplexed imaging data in R

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.github/workflows/build-checks-devel.yml

.github/workflows/build-checks-release.yml

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DESCRIPTION

NAMESPACE

NEWS

R/AllClasses.R R/AllGenerics.R R/CytoImageList-class.R R/CytoImageList-utils.R R/CytoImageList.R R/compImage.R R/cytomapperShiny.R R/data.R R/loadImages.R R/measureObjects.R R/namespace.R R/plotCells.R R/plotPixels.R R/plotting-param.R R/plotting-utils.R R/server-utils.R R/shiny-server.R R/shiny-ui.R R/subsetting-utils.R R/validityChecks.R R/validityChecksShiny.R README.md

_pkgdown.yml

data/pancreasImages.RData

data/pancreasMasks.RData

data/pancreasSCE.RData

inst/CITATION

inst/extdata/E34_imc.tiff

inst/extdata/E34_mask.tiff

inst/extdata/G01_imc.tiff

inst/extdata/G01_mask.tiff

inst/extdata/J02_imc.tiff

inst/extdata/J02_mask.tiff

inst/scripts/1_LoadPancreasData.Rmd inst/scripts/2_LoadPancreasImages.Rmd inst/scripts/3_GenerateToyData.Rmd inst/scripts/README.md man/CytoImageList-manipulation.Rd man/CytoImageList-naming.Rd man/CytoImageList-subsetting.Rd man/CytoImageList.Rd man/compImage.Rd man/cytomapperShiny.Rd man/loadImages.Rd man/measureObjects.Rd man/pancreasImages.Rd man/pancreasMasks.Rd man/pancreasSCE.Rd man/plotCells.Rd man/plotPixels.Rd man/plotting-param.Rd tests/testthat.R tests/testthat/_snaps/shiny_ui.md tests/testthat/_snaps/shiny_ui.new.md tests/testthat/_snaps/shiny_ui_ondisk.md tests/testthat/apps/images_app/app.R tests/testthat/apps/images_app/tests/shinytest.R

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tests/testthat/apps/images_app/tests/shinytest/complex_assay_change.R

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tests/testthat/testthat-problems.rds

vignettes/cytomapper.Rmd vignettes/cytomapper_ondisk.Rmd

vignettes/cytomapper_sticker.png

vignettes/library.bib

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Visualization of highly multiplexed imaging data in R

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