Files in BrendelGroup/BWASPR
Various R functions and scripts for the analyis of BWASP workflow output
.Rbuildignore
.gitignore
DESCRIPTION
INSTALL.md
NAMESPACE
R/annotate_methylome.R
R/cmStats.R
R/cmpSamples.R
R/cmpSites.R
R/det_dmsg.R
R/det_dmt.R
R/det_mrpr.R
R/explore_dmsg.R
R/get_genome_annotation.R
R/map_methylome.R
R/map_mrpr.R
R/mcalls2mkobj.R
R/rank_dmg.R
R/rank_rbm.R
R/setup_BWASPR.R
R/show_dmsg.R
README.md
bin/xcmprnks
bin/xcotable
bin/xmkpdf
bwaspr.def
demo/README.md
demo/Rscript.BWASPR
demo/sample.conf
demo/xcheck
demo/xdoit
inst/extdata/Am.dat
inst/extdata/Am.par
inst/extdata/AmGFF3DIR/Amel.exon.gff3
inst/extdata/AmGFF3DIR/Amel.gene.gff3
inst/extdata/AmGFF3DIR/Amel.pcg-3pUTR.gff3
inst/extdata/AmGFF3DIR/Amel.pcg-5pUTR.gff3
inst/extdata/AmGFF3DIR/Amel.pcg-CDS.gff3
inst/extdata/AmGFF3DIR/Amel.pcg-exon.gff3
inst/extdata/AmGFF3DIR/Amel.pcg-gene.gff3
inst/extdata/AmGFF3DIR/Amel.pcg-promoter.gff3
inst/extdata/AmGFF3DIR/Amel.pcg.gff3
inst/extdata/AmGFF3DIR/Amel.pmrna.gff3
inst/extdata/AmGFF3DIR/Amel.promoter.gff3
inst/extdata/AmHE.dat
inst/extdata/AmHE.par
inst/extdata/Amel-forager.CpGhsm.mcalls
inst/extdata/Amel-forager.CpGscd.mcalls
inst/extdata/Amel-nurse.CpGhsm.mcalls
inst/extdata/Amel-nurse.CpGscd.mcalls
man/annotate_methylome.Rd
man/cmStats.Rd
man/cmpSamples.Rd
man/cmpSites.Rd
man/det_dmsg.Rd
man/det_dmt.Rd
man/det_mrpr.Rd
man/explore_dmsg.Rd
man/get_genome_annotation.Rd
man/map_methylome.Rd
man/map_mrpr.Rd
man/mcalls2mkobj.Rd
man/rank_dmg.Rd
man/rank_rbm.Rd
man/setup_BWASPR.Rd
man/show_dmsg.Rd
