Man pages for BrendelGroup/BWASPR
Various R functions and scripts for the analyis of BWASP workflow output
| annotate_methylome | annotate_methylome() This function annotates the methylome... |
| cmpSamples | cmpSamples() This function will methylKit::unite() input... |
| cmpSites | cmpSites() This function compares (potential) methylation... |
| cmStats | cmStats() This function generates coverage and methylation... |
| det_dmsg | det_dmsg() This function generates lists of differentially... |
| det_dmt | det_dmt() This function generates list of differentially... |
| det_mrpr | det_mrpr() This function determines methylation-rich and... |
| explore_dmsg | explore_dmsg() This function sorts genes by meth_level per... |
| get_genome_annotation | get_genome_annotation() This function derives GRanges objects... |
| map_methylome | map_methylome() This function maps the scd and hsm sites onto... |
| map_mrpr | map_mrpr() This function maps the scd and hsm sites onto... |
| mcalls2mkobj | mcalls2mkobj() This function will select BWASP mcalls files... |
| rank_dmg | rank_dmg() This function sorts dmgenes by ADMpNucl and plots... |
| rank_rbm | rank_rbm() This function subsets the provided methylRaw... |
| setup_BWASPR | setup_BWASPR() Setting up a BWASPR analysis structure |
| show_dmsg | show_dmsg() This function generates will plot heatmaps of... |
