build_manifest: Build file manifest from 10X cellranger-atac
In BrianLohman/SingleCellGarage: A collection of utilities to make working with (and combining) existing single cell packages easier
Description
Usage
Arguments
Examples
Description
Assumes that each sample is in its own folder. Pattern match to get multiple samples
Returns named list where each sample has paths to peaks.bed, singlecell.csv, and fragments file
Also possible to build list or make corrections manually
Usage
1
Arguments
pattern
Common string among all samples
Examples
1
2
3
4
## Not run:
m = build_manifest(pattern = "18655")
## End(Not run)
BrianLohman/SingleCellGarage documentation built on Feb. 24, 2022, 4:58 a.m.
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Description Usage Arguments Examples
Description
Assumes that each sample is in its own folder. Pattern match to get multiple samples Returns named list where each sample has paths to peaks.bed, singlecell.csv, and fragments file Also possible to build list or make corrections manually
Usage
1 |
Arguments
pattern |
Common string among all samples |
Examples
1 2 3 4 | ## Not run:
m = build_manifest(pattern = "18655")
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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