loupe_mouse_to_human: Convert Loupe differential gene expression results from mouse...
In BrianLohman/SingleCellGarage: A collection of utilities to make working with (and combining) existing single cell packages easier
View source: R/mouse_to_human.R
Description
After running differential gene expression in Loupe with mouse data,
gene names need to be converted to human homologs for GSEA. Returns
list where each element is a cluster from the Loupe export
Usage
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loupe_mouse_to_human(
loupe_export = NULL,
mouse_db = hciRdata::mouse102,
only_named = TRUE
)
Arguments
loupe_export
The CSV table exported from Loupe
mouse_db
The mouse database with human homologs. Default is hciRdata::mouse102
only_named
Return only genes with human homologs. Defalt is TRUE
BrianLohman/SingleCellGarage documentation built on Feb. 24, 2022, 4:58 a.m.
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View source: R/mouse_to_human.R
Description
After running differential gene expression in Loupe with mouse data, gene names need to be converted to human homologs for GSEA. Returns list where each element is a cluster from the Loupe export
Usage
1 2 3 4 5 | loupe_mouse_to_human(
loupe_export = NULL,
mouse_db = hciRdata::mouse102,
only_named = TRUE
)
|
Arguments
loupe_export |
The CSV table exported from Loupe |
mouse_db |
The mouse database with human homologs. Default is hciRdata::mouse102 |
only_named |
Return only genes with human homologs. Defalt is TRUE |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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