getTopRatioLabels: Get sequence labels for psam ratio plot.
In BussemakerLab/SelexGLM: Functions for performing feature-based analyis of SELEX-seq data using generalized linear models
Description
Usage
Arguments
Value
Description
Gets list of nucleotides maximizing ratio of PSAMs from 2 objects of class 'model' across the models' footprints.
Usage
1
getTopRatioLabels(model1, model2, iter = NULL)
Arguments
model1
First model used to extract mono-nucleotide feature top ratio labels.
model2
Second model used to extract mono-nucleotide feature top ratio labels.
Value
Vector of nucleotides, with nucleotide at index i being the nucleotide that maximizes the ratio of model1 nucleotide PSAM to model2 nucleotide PSAM at the i'th position.
BussemakerLab/SelexGLM documentation built on May 17, 2019, 5:41 p.m.
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Description Usage Arguments Value
Description
Gets list of nucleotides maximizing ratio of PSAMs from 2 objects of class 'model' across the models' footprints.
Usage
1 | getTopRatioLabels(model1, model2, iter = NULL)
|
Arguments
model1 |
First model used to extract mono-nucleotide feature top ratio labels. |
model2 |
Second model used to extract mono-nucleotide feature top ratio labels. |
Value
Vector of nucleotides, with nucleotide at index i being the nucleotide that maximizes the ratio of model1 nucleotide PSAM to model2 nucleotide PSAM at the i'th position.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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