initialize-Shape-method: Constructor for S4 class 'Shape'
In BussemakerLab/SelexGLM: Functions for performing feature-based analyis of SELEX-seq data using generalized linear models
Description
Initializes an S4 class to represent shape feature coefficients
Usage
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## S4 method for signature 'Shape'
initialize(.Object, seedLen, Shape.upFootprintExtend,
Shape.downFootprintExtend, fS.upFootprintExtend, fS.downFootprintExtend,
fpLen, Shape.set, Shape.equivMat, Shape.values, Shape.errors, Shape.z,
Shape.sig, Shape.oldValues, Shape.oldErrors, Shape.oldZ, Shape.oldSig,
shapeParamsUsed, rcSymmetric, ...)
Arguments
shapeParamsUsed
list of length 1 containing names of shape parameters to be included in model.
rcSymmetric
logical: indicates the model described by the 'Shape' object will be reverse complement symmetric.
BussemakerLab/SelexGLM documentation built on May 17, 2019, 5:41 p.m.
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Description
Initializes an S4 class to represent shape feature coefficients
Usage
1 2 3 4 5 6 | ## S4 method for signature 'Shape'
initialize(.Object, seedLen, Shape.upFootprintExtend,
Shape.downFootprintExtend, fS.upFootprintExtend, fS.downFootprintExtend,
fpLen, Shape.set, Shape.equivMat, Shape.values, Shape.errors, Shape.z,
Shape.sig, Shape.oldValues, Shape.oldErrors, Shape.oldZ, Shape.oldSig,
shapeParamsUsed, rcSymmetric, ...)
|
Arguments
shapeParamsUsed |
list of length 1 containing names of shape parameters to be included in model. |
rcSymmetric |
logical: indicates the model described by the 'Shape' object will be reverse complement symmetric. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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