plot-N-ANY-method: Returns Standardized PSAM Plot for N

In BussemakerLab/SelexGLM: Functions for performing feature-based analyis of SELEX-seq data using generalized linear models

Description

Gets PSAM dot plot from N.values slot.

Usage

## S4 method for signature 'N,ANY'
plot(x, Ntitle = "", maxErr = 1, iter = NULL,
  regs = NULL, lengths = NULL, ddG = FALSE)

Arguments

x	Object of class N.
Ntitle	Title for plot.
maxErr	Maximum height of error bars to use in plotting.
iter	Iteration of beta values to be used in plot. If iteration == NULL, the most recent round of beta values are used.
regs	Optional parameter giving labels to use for region shading. If used, lengths parameter must also be specified.
lengths	Length of region parameters to be included for shading.
ddG	logical: If ddG == TRUE, ddG units are used on y-axis. If ddG == FALSE, relative affinities are used for y-axis.

Value

Ggplot dot plot of mono-nucleotide values

BussemakerLab/SelexGLM documentation built on May 17, 2019, 5:41 p.m.