plot-model-ANY-method: Plot model Plots object of class model for any combination of...

In BussemakerLab/SelexGLM: Functions for performing feature-based analyis of SELEX-seq data using generalized linear models

Description

Plot model

Plots object of class model for any combination of inputs.

Usage

## S4 method for signature 'model,ANY'
plot(x, plotTitle = NULL, maxErr = 1, iter = NULL,
  regs, lengths, Nplot.ddG = FALSE, verticalPlots = FALSE)

Arguments

x	Object of class model.
plotTitle	Optional title parameter to be used for plot.
maxErr	Optional parameter giving maximum error to be displayed in nucleotide affinity plot.
iter	Iteration of beta values to be used in plot. If iteration == NULL, the most recent round of beta values are used.
regs	Optional list containing names of different shaded regions for nucleotide and shape plots.
lengths	Optional list containing lengths of regions in regs, corresponding to different shaded regions for nucleotide and shape plots.
Nplot.ddG	logical: If TRUE, ddG scaling is used for nucleotide plot. If FALSE, affinity scaling is using for nucleotide plot.
verticalPlots	logical: If TRUE, all plots are stacked vertically. If false, plots are fit into a roughly square block.

Value

ggplot plots of intercept values

BussemakerLab/SelexGLM documentation built on May 17, 2019, 5:41 p.m.