plotViews: Plot View-specific ddG contributions for object of class...

In BussemakerLab/SelexGLM: Functions for performing feature-based analyis of SELEX-seq data using generalized linear models

Description

Plots view-specific ddG contributions for object of class Intercept.

Usage

plotViews(x, rcSymmetric, title = NULL, iter = NULL)

Arguments

x	Object of class Intercept.
rcSymmetric	logical: indicates that a reverse complement symmetric model was used for fitting beta values. If missing(rcSymmetric), a value is inferred from the I.values slot of x.
title	Optional title parameter for plot.
iter	Iteration of beta values to be used in plot. If iteration == NULL, the most recent round of beta values are used.

Details

If rcSymmetric is TRUE, view-specific beta values are only modeled for one DNA strand orientation (1x numView - 1 beta values). If rcSymmetric is FALSE, view-specific beta values are modeled for both DNA strand orientations (2x numView - 1 beta values).

BussemakerLab/SelexGLM documentation built on May 17, 2019, 5:41 p.m.