scoreKmers: Score K-mer Sequences
In BussemakerLab/SelexGLM: Functions for performing feature-based analyis of SELEX-seq data using generalized linear models
Description
Scores Kmers using model beta values for all feature parameters estimated with regression.
Usage
1
2
scoreKmers(data, model, l.index, PSAMcol = "PredictedAffinity",
seqCol = "Kmer")
Arguments
data
Table of k-mers.
model
Object of class model.
l.index
Left-most position of PSAM to be used for scoring,
PSAMcol
Name for PSAM affinity column.
seqCol
Name for k-mer variable to be scored.
BussemakerLab/SelexGLM documentation built on May 17, 2019, 5:41 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
Scores Kmers using model beta values for all feature parameters estimated with regression.
Usage
1 2 | scoreKmers(data, model, l.index, PSAMcol = "PredictedAffinity",
seqCol = "Kmer")
|
Arguments
data |
Table of k-mers. |
model |
Object of class model. |
l.index |
Left-most position of PSAM to be used for scoring, |
PSAMcol |
Name for PSAM affinity column. |
seqCol |
Name for k-mer variable to be scored. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.