indDE: Differential expression analysis for an individual study.
In CAMO-R/Rpackage: Perform cross-species resemblance analysis

indDE

R Documentation

Differential expression analysis for an individual study.

Description

The indDE is function to perform differential expression analysis for an individual study.

Usage

indDE(data, group, data.type, case.label, ctrl.label)

Arguments

`data:`	the gene expression matrix
`group:`	the group label.
`data.type:`	"microarray" or "RNAseq". LIMMA is performed for microarray data while DEseq2 is performed for RNAseq data.
`case.label:`	the label name for the case group.
`control.label:`	the label name for the control group.

Value

a summary data frame of log fold change, lfc standard error, p-value and q-value.

Examples

## Not run: 
data(hb)
summaryDE = indDE(data=data,group=as.factor(group),data.type="microarray",
                   case.label="2", ctrl.label="1")

## End(Not run)

CAMO-R/Rpackage documentation built on July 20, 2023, 6:04 a.m.