mdsGlobal: Genome-wide MDS plot for multiple pairs
In CAMO-R/Rpackage: Perform cross-species resemblance analysis

mdsGlobal

R Documentation

Genome-wide MDS plot for multiple pairs

Description

The mdsGlobal is function to generate : multidimensional scaling plot for genome-wide c-scores or d-scores.

Usage

mdsGlobal(acs, model.name, sep = "_", file)

Arguments

`acs:`	pairwise c-scores or d-scores matrix (c-scores is recommended)
`model.name:`	a vector of dataset names.
`sep:`	a character string to separate the data terms. Please avoid characters appeared in model.name.
`file:`	the output file name.

Value

A MDS plot of c-scores or d-scores for all study pairs to visualize global distance between each data pair.

Examples

## Not run: 
#mcmc.merge.list from the merge step (see the example in function 'merge')
#ACS_ADS_global from the multi_ACS_ADS_global step (see the example in 'multi_ACS_ADS_global')
dataset.names = c("hb","hs","ht","ha","hi","hl",
                  "mb","ms","mt","ma","mi","ml")
mdsGlobal(ACS_ADS_global$ACS,dataset.names,sep="_",file="~/globalMDS.pdf")

## End(Not run)

CAMO-R/Rpackage documentation built on July 20, 2023, 6:04 a.m.