add_instant_reproduction: Add instant reproduction number measures to provided covid19...

In CBDRH/covidrecon: Pulls and Analyses COVID data

Description

Add instant reproduction number measures to provided covid19 data

Usage

add_instant_reproduction(
  covid_data,
  estimate_method = "parametric_si",
  si_sample = NULL,
  config = list(mean_si = 4.7, std_si = 2.9)
)

Arguments

covid_data	covid19 data
estimate_method	default is "parametric_si"
si_sample	SI samples. Default is NULL.
config	named list of values to pass to EpiEstim::make_config. Default is mean_si = 4.7, and std_si = 2.9.

Value

data.frame with covid19 columns plus output of EpiEstim::estimate_R and columns on estimated mean R values and quantiles etc.

CBDRH/covidrecon documentation built on May 27, 2020, 9:41 a.m.