WGCNA_6_4: Step 4: generating modules for WGCNA

In CBIIT-CGBB/OmicPath: OmicPath

Step 4: generating modules for WGCNA

Description

Step 4: generating modules for WGCNA

Usage

  WGCNA_6_4(expr=expr, pheno=pheno, mdir="module", cutHeight=200, 
  softPower=8, minM=25, cutH=0.996, deepSplit=1,  project.name="WGCNA_net");

Arguments

expr	expr: gene expression data
pheno	pheno: phenotype data
mdir	mdir: output directory for module
cutHeight	cutHeight: outlier threshold
softPower	softPower: power value from step 2
minM	minM: minimum node number per module from step 3
cutH	cutH: threshold for module selecting from step 3
deepSplit	deepSplit: deep split value from step 3
project.name	project.name: project name

Author(s)

Ying Hu <[e-mail]> Chunhua Yan <[e-mail]>

References

##

Examples

##

CBIIT-CGBB/OmicPath documentation built on Sept. 27, 2024, 4:53 a.m.