Files in CBIIT-CGBB/scCorr
A graph-based k-partitioning approach for single-cell gene-gene correlation analysis
DESCRIPTION
Image/1_ABCD.png
Image/1_EFG.png
Image/1_HIJK.png
Image/1_L.png
Image/2_AB.png
Image/2_CD.png
Image/2_EF.png
Image/2_GH.png
Image/supp1_AB.png
Image/supp2_AB.png
Image/supp3_A.png
Image/supp3_BC.png
Image/supp4_ABCD.png
Image/supp5_A.png
Image/supp6_ABC.png
Image/workflow_diagram.png
NAMESPACE
R/GCluster.R
R/c_list.R
R/d_list.R
R/get_value.R
R/m2p.R
R/m_list.R
R/merge_cluster.R
R/merge_list.R
R/mgGCluster.R
R/rotate_coordinate.R
R/scale_v.R
R/tjGCluster.R
R/tjGCluster2.R
R/tj_list.R
README.md
data/01/00zero_dist.RData
data/01/01cluster_ct.txt
data/01/02clust_table_raw.txt
data/01/03clust_table.txt
data/01/03clust_table_cluID.txt
data/01/03clust_table_cluNum.txt
data/01/do_tsne30_2000.txt
data/01/gene4matrix_Seurat.txt
data/01/hsa04662_f.txt
data/01/n1000.RData
data/01/n10000.RData
data/01/n13000.RData
data/01/n15973.RData
data/01/n4000.RData
data/01/n7000.RData
data/02/06sc_roc.RData
data/02/07clu_roc/CD4_10.RData
data/02/07clu_roc/CD4_100.RData
data/02/07clu_roc/CD4_1000.RData
data/02/07clu_roc/CD4_110.RData
data/02/07clu_roc/CD4_120.RData
data/02/07clu_roc/CD4_130.RData
data/02/07clu_roc/CD4_140.RData
data/02/07clu_roc/CD4_150.RData
data/02/07clu_roc/CD4_160.RData
data/02/07clu_roc/CD4_170.RData
data/02/07clu_roc/CD4_180.RData
data/02/07clu_roc/CD4_190.RData
data/02/07clu_roc/CD4_20.RData
data/02/07clu_roc/CD4_200.RData
data/02/07clu_roc/CD4_21.RData
data/02/07clu_roc/CD4_210.RData
data/02/07clu_roc/CD4_22.RData
data/02/07clu_roc/CD4_220.RData
data/02/07clu_roc/CD4_23.RData
data/02/07clu_roc/CD4_230.RData
data/02/07clu_roc/CD4_24.RData
data/02/07clu_roc/CD4_240.RData
data/02/07clu_roc/CD4_25.RData
data/02/07clu_roc/CD4_250.RData
data/02/07clu_roc/CD4_26.RData
data/02/07clu_roc/CD4_260.RData
data/02/07clu_roc/CD4_27.RData
data/02/07clu_roc/CD4_270.RData
data/02/07clu_roc/CD4_28.RData
data/02/07clu_roc/CD4_280.RData
data/02/07clu_roc/CD4_29.RData
data/02/07clu_roc/CD4_290.RData
data/02/07clu_roc/CD4_30.RData
data/02/07clu_roc/CD4_300.RData
data/02/07clu_roc/CD4_31.RData
data/02/07clu_roc/CD4_310.RData
data/02/07clu_roc/CD4_32.RData
data/02/07clu_roc/CD4_320.RData
data/02/07clu_roc/CD4_33.RData
data/02/07clu_roc/CD4_330.RData
data/02/07clu_roc/CD4_34.RData
data/02/07clu_roc/CD4_340.RData
data/02/07clu_roc/CD4_35.RData
data/02/07clu_roc/CD4_350.RData
data/02/07clu_roc/CD4_36.RData
data/02/07clu_roc/CD4_360.RData
data/02/07clu_roc/CD4_37.RData
data/02/07clu_roc/CD4_370.RData
data/02/07clu_roc/CD4_38.RData
data/02/07clu_roc/CD4_380.RData
data/02/07clu_roc/CD4_39.RData
data/02/07clu_roc/CD4_390.RData
data/02/07clu_roc/CD4_40.RData
data/02/07clu_roc/CD4_400.RData
data/02/07clu_roc/CD4_410.RData
data/02/07clu_roc/CD4_420.RData
data/02/07clu_roc/CD4_430.RData
data/02/07clu_roc/CD4_440.RData
data/02/07clu_roc/CD4_450.RData
data/02/07clu_roc/CD4_460.RData
data/02/07clu_roc/CD4_470.RData
data/02/07clu_roc/CD4_480.RData
data/02/07clu_roc/CD4_490.RData
data/02/07clu_roc/CD4_50.RData
data/02/07clu_roc/CD4_500.RData
data/02/07clu_roc/CD4_510.RData
data/02/07clu_roc/CD4_520.RData
data/02/07clu_roc/CD4_530.RData
data/02/07clu_roc/CD4_540.RData
data/02/07clu_roc/CD4_550.RData
data/02/07clu_roc/CD4_560.RData
data/02/07clu_roc/CD4_570.RData
data/02/07clu_roc/CD4_580.RData
data/02/07clu_roc/CD4_590.RData
data/02/07clu_roc/CD4_60.RData
data/02/07clu_roc/CD4_600.RData
data/02/07clu_roc/CD4_610.RData
data/02/07clu_roc/CD4_620.RData
data/02/07clu_roc/CD4_630.RData
data/02/07clu_roc/CD4_640.RData
data/02/07clu_roc/CD4_650.RData
data/02/07clu_roc/CD4_660.RData
data/02/07clu_roc/CD4_670.RData
data/02/07clu_roc/CD4_680.RData
data/02/07clu_roc/CD4_690.RData
data/02/07clu_roc/CD4_70.RData
data/02/07clu_roc/CD4_700.RData
data/02/07clu_roc/CD4_710.RData
data/02/07clu_roc/CD4_720.RData
data/02/07clu_roc/CD4_730.RData
data/02/07clu_roc/CD4_740.RData
data/02/07clu_roc/CD4_750.RData
data/02/07clu_roc/CD4_760.RData
data/02/07clu_roc/CD4_770.RData
data/02/07clu_roc/CD4_780.RData
data/02/07clu_roc/CD4_790.RData
data/02/07clu_roc/CD4_80.RData
data/02/07clu_roc/CD4_800.RData
data/02/07clu_roc/CD4_810.RData
data/02/07clu_roc/CD4_820.RData
data/02/07clu_roc/CD4_830.RData
data/02/07clu_roc/CD4_840.RData
data/02/07clu_roc/CD4_850.RData
data/02/07clu_roc/CD4_860.RData
data/02/07clu_roc/CD4_870.RData
data/02/07clu_roc/CD4_880.RData
data/02/07clu_roc/CD4_890.RData
data/02/07clu_roc/CD4_90.RData
data/02/07clu_roc/CD4_900.RData
data/02/07clu_roc/CD4_910.RData
data/02/07clu_roc/CD4_920.RData
data/02/07clu_roc/CD4_930.RData
data/02/07clu_roc/CD4_940.RData
data/02/07clu_roc/CD4_950.RData
data/02/07clu_roc/CD4_960.RData
data/02/07clu_roc/CD4_970.RData
data/02/07clu_roc/CD4_980.RData
data/02/07clu_roc/CD4_990.RData
data/02/07clu_roc/CD8_10.RData
data/02/07clu_roc/CD8_100.RData
data/02/07clu_roc/CD8_1000.RData
data/02/07clu_roc/CD8_110.RData
data/02/07clu_roc/CD8_120.RData
data/02/07clu_roc/CD8_130.RData
data/02/07clu_roc/CD8_140.RData
data/02/07clu_roc/CD8_150.RData
data/02/07clu_roc/CD8_160.RData
data/02/07clu_roc/CD8_170.RData
data/02/07clu_roc/CD8_180.RData
data/02/07clu_roc/CD8_190.RData
data/02/07clu_roc/CD8_20.RData
data/02/07clu_roc/CD8_200.RData
data/02/07clu_roc/CD8_21.RData
data/02/07clu_roc/CD8_210.RData
data/02/07clu_roc/CD8_22.RData
data/02/07clu_roc/CD8_220.RData
data/02/07clu_roc/CD8_23.RData
data/02/07clu_roc/CD8_230.RData
data/02/07clu_roc/CD8_24.RData
data/02/07clu_roc/CD8_240.RData
data/02/07clu_roc/CD8_25.RData
data/02/07clu_roc/CD8_250.RData
data/02/07clu_roc/CD8_26.RData
data/02/07clu_roc/CD8_260.RData
data/02/07clu_roc/CD8_27.RData
data/02/07clu_roc/CD8_270.RData
data/02/07clu_roc/CD8_28.RData
data/02/07clu_roc/CD8_280.RData
data/02/07clu_roc/CD8_29.RData
data/02/07clu_roc/CD8_290.RData
data/02/07clu_roc/CD8_30.RData
data/02/07clu_roc/CD8_300.RData
data/02/07clu_roc/CD8_31.RData
data/02/07clu_roc/CD8_310.RData
data/02/07clu_roc/CD8_32.RData
data/02/07clu_roc/CD8_320.RData
data/02/07clu_roc/CD8_33.RData
data/02/07clu_roc/CD8_330.RData
data/02/07clu_roc/CD8_34.RData
data/02/07clu_roc/CD8_340.RData
data/02/07clu_roc/CD8_35.RData
data/02/07clu_roc/CD8_350.RData
data/02/07clu_roc/CD8_36.RData
data/02/07clu_roc/CD8_360.RData
data/02/07clu_roc/CD8_37.RData
data/02/07clu_roc/CD8_370.RData
data/02/07clu_roc/CD8_38.RData
data/02/07clu_roc/CD8_380.RData
data/02/07clu_roc/CD8_39.RData
data/02/07clu_roc/CD8_390.RData
data/02/07clu_roc/CD8_40.RData
data/02/07clu_roc/CD8_400.RData
data/02/07clu_roc/CD8_410.RData
data/02/07clu_roc/CD8_420.RData
data/02/07clu_roc/CD8_430.RData
data/02/07clu_roc/CD8_440.RData
data/02/07clu_roc/CD8_450.RData
data/02/07clu_roc/CD8_460.RData
data/02/07clu_roc/CD8_470.RData
data/02/07clu_roc/CD8_480.RData
data/02/07clu_roc/CD8_490.RData
data/02/07clu_roc/CD8_50.RData
data/02/07clu_roc/CD8_500.RData
data/02/07clu_roc/CD8_510.RData
data/02/07clu_roc/CD8_520.RData
data/02/07clu_roc/CD8_530.RData
data/02/07clu_roc/CD8_540.RData
data/02/07clu_roc/CD8_550.RData
data/02/07clu_roc/CD8_560.RData
data/02/07clu_roc/CD8_570.RData
data/02/07clu_roc/CD8_580.RData
data/02/07clu_roc/CD8_590.RData
data/02/07clu_roc/CD8_60.RData
data/02/07clu_roc/CD8_600.RData
data/02/07clu_roc/CD8_610.RData
data/02/07clu_roc/CD8_620.RData
data/02/07clu_roc/CD8_630.RData
data/02/07clu_roc/CD8_640.RData
data/02/07clu_roc/CD8_650.RData
data/02/07clu_roc/CD8_660.RData
data/02/07clu_roc/CD8_670.RData
data/02/07clu_roc/CD8_680.RData
data/02/07clu_roc/CD8_690.RData
data/02/07clu_roc/CD8_70.RData
data/02/07clu_roc/CD8_700.RData
data/02/07clu_roc/CD8_710.RData
data/02/07clu_roc/CD8_720.RData
data/02/07clu_roc/CD8_730.RData
data/02/07clu_roc/CD8_740.RData
data/02/07clu_roc/CD8_750.RData
data/02/07clu_roc/CD8_760.RData
data/02/07clu_roc/CD8_770.RData
data/02/07clu_roc/CD8_780.RData
data/02/07clu_roc/CD8_790.RData
data/02/07clu_roc/CD8_80.RData
data/02/07clu_roc/CD8_800.RData
data/02/07clu_roc/CD8_810.RData
data/02/07clu_roc/CD8_820.RData
data/02/07clu_roc/CD8_830.RData
data/02/07clu_roc/CD8_840.RData
data/02/07clu_roc/CD8_850.RData
data/02/07clu_roc/CD8_860.RData
data/02/07clu_roc/CD8_870.RData
data/02/07clu_roc/CD8_880.RData
data/02/07clu_roc/CD8_890.RData
data/02/07clu_roc/CD8_90.RData
data/02/07clu_roc/CD8_900.RData
data/02/07clu_roc/CD8_910.RData
data/02/07clu_roc/CD8_920.RData
data/02/07clu_roc/CD8_930.RData
data/02/07clu_roc/CD8_940.RData
data/02/07clu_roc/CD8_950.RData
data/02/07clu_roc/CD8_960.RData
data/02/07clu_roc/CD8_970.RData
data/02/07clu_roc/CD8_980.RData
data/02/07clu_roc/CD8_990.RData
data/02/08cor_glm_CD4.txt
data/02/100.txt
data/02/cd4_100.txt
data/02/cor_glm_clu_CD4_n5/100.txt
data/02/cor_glm_clu_CD4_n5/1000.txt
data/02/cor_glm_clu_CD4_n5/200.txt
data/02/cor_glm_clu_CD4_n5/300.txt
data/02/cor_glm_clu_CD4_n5/40.txt
data/02/cor_glm_clu_CD4_n5/400.txt
data/02/cor_glm_clu_CD4_n5/50.txt
data/02/cor_glm_clu_CD4_n5/500.txt
data/02/cor_glm_clu_CD4_n5/60.txt
data/02/cor_glm_clu_CD4_n5/600.txt
data/02/cor_glm_clu_CD4_n5/70.txt
data/02/cor_glm_clu_CD4_n5/700.txt
data/02/cor_glm_clu_CD4_n5/80.txt
data/02/cor_glm_clu_CD4_n5/800.txt
data/02/cor_glm_clu_CD4_n5/90.txt
data/02/cor_glm_clu_CD4_n5/900.txt
data/NK_dat.Rdata
data/b_dat.Rdata
data/cd4_dat.Rdata
data/cd8_dat.Rdata
data/other_dat.Rdata
data/supp/01clust1_out.txt
data/supp/02clust2_out.txt
data/supp/08cor_glm_CD4.txt
data/supp/09cor_glm_clu_CD4/100.txt
data/supp/09cor_glm_clu_CD4/1000.txt
data/supp/09cor_glm_clu_CD4/200.txt
data/supp/09cor_glm_clu_CD4/300.txt
data/supp/09cor_glm_clu_CD4/40.txt
data/supp/09cor_glm_clu_CD4/400.txt
data/supp/09cor_glm_clu_CD4/50.txt
data/supp/09cor_glm_clu_CD4/500.txt
data/supp/09cor_glm_clu_CD4/60.txt
data/supp/09cor_glm_clu_CD4/600.txt
data/supp/09cor_glm_clu_CD4/70.txt
data/supp/09cor_glm_clu_CD4/700.txt
data/supp/09cor_glm_clu_CD4/80.txt
data/supp/09cor_glm_clu_CD4/800.txt
data/supp/09cor_glm_clu_CD4/90.txt
data/supp/09cor_glm_clu_CD4/900.txt
data/supp/13cor_glm_clu_CD4_n10/100.txt
data/supp/13cor_glm_clu_CD4_n10/1000.txt
data/supp/13cor_glm_clu_CD4_n10/200.txt
data/supp/13cor_glm_clu_CD4_n10/300.txt
data/supp/13cor_glm_clu_CD4_n10/40.txt
data/supp/13cor_glm_clu_CD4_n10/400.txt
data/supp/13cor_glm_clu_CD4_n10/50.txt
data/supp/13cor_glm_clu_CD4_n10/500.txt
data/supp/13cor_glm_clu_CD4_n10/60.txt
data/supp/13cor_glm_clu_CD4_n10/600.txt
data/supp/13cor_glm_clu_CD4_n10/70.txt
data/supp/13cor_glm_clu_CD4_n10/700.txt
data/supp/13cor_glm_clu_CD4_n10/80.txt
data/supp/13cor_glm_clu_CD4_n10/800.txt
data/supp/13cor_glm_clu_CD4_n10/90.txt
data/supp/13cor_glm_clu_CD4_n10/900.txt
data/supp/13cor_glm_clu_CD4_n15/100.txt
data/supp/13cor_glm_clu_CD4_n15/1000.txt
data/supp/13cor_glm_clu_CD4_n15/200.txt
data/supp/13cor_glm_clu_CD4_n15/300.txt
data/supp/13cor_glm_clu_CD4_n15/40.txt
data/supp/13cor_glm_clu_CD4_n15/400.txt
data/supp/13cor_glm_clu_CD4_n15/50.txt
data/supp/13cor_glm_clu_CD4_n15/500.txt
data/supp/13cor_glm_clu_CD4_n15/60.txt
data/supp/13cor_glm_clu_CD4_n15/600.txt
data/supp/13cor_glm_clu_CD4_n15/70.txt
data/supp/13cor_glm_clu_CD4_n15/700.txt
data/supp/13cor_glm_clu_CD4_n15/80.txt
data/supp/13cor_glm_clu_CD4_n15/800.txt
data/supp/13cor_glm_clu_CD4_n15/90.txt
data/supp/13cor_glm_clu_CD4_n15/900.txt
data/supp/13cor_glm_clu_CD4_n5/100.txt
data/supp/13cor_glm_clu_CD4_n5/1000.txt
data/supp/13cor_glm_clu_CD4_n5/200.txt
data/supp/13cor_glm_clu_CD4_n5/300.txt
data/supp/13cor_glm_clu_CD4_n5/40.txt
data/supp/13cor_glm_clu_CD4_n5/400.txt
data/supp/13cor_glm_clu_CD4_n5/50.txt
data/supp/13cor_glm_clu_CD4_n5/500.txt
data/supp/13cor_glm_clu_CD4_n5/60.txt
data/supp/13cor_glm_clu_CD4_n5/600.txt
data/supp/13cor_glm_clu_CD4_n5/70.txt
data/supp/13cor_glm_clu_CD4_n5/700.txt
data/supp/13cor_glm_clu_CD4_n5/80.txt
data/supp/13cor_glm_clu_CD4_n5/800.txt
data/supp/13cor_glm_clu_CD4_n5/90.txt
data/supp/13cor_glm_clu_CD4_n5/900.txt
data/supp/14do_simulation/n1000.RData
data/supp/14do_simulation/n10000.RData
data/supp/14do_simulation/n16337.RData
data/supp/14do_simulation/n4000.RData
data/supp/14do_simulation/n7000.RData
examples/01_ABCD.R
examples/01_EFG.R
examples/01_HIJK.R
examples/01_L.R
examples/02_AB.R
examples/02_CD.R
examples/02_EF.R
examples/02_GH.R
examples/supp1_AB.R
examples/supp2_AB.R
examples/supp3_A.R
examples/supp3_BC.R
examples/supp4_ABCD.R
examples/supp5_A.R
examples/supp6_ABC.R
examples/supp_func.R
examples/test01_do_tsne.R
examples/test02_do_GCluster.R
examples/test03_merge_clusters.R
examples/test04_rename_clusterID.R
examples/test05_do_corr.R
man/GCluster.Rd
man/c_list.Rd
man/d_list.Rd
man/get_value.Rd
man/m2p.Rd
man/m_list.Rd
man/merge_cluster.Rd
man/merge_list.Rd
man/mgGCluster.Rd
man/r_c.Rd
man/scale.v.Rd
man/tjGCluster.Rd
man/tjGCluster2.Rd
man/tj_list.Rd
test/01test_c_list.R
test/02test_d_list.R
test/03test_GCluster.R
test/04test_get_value.R
test/05test_m_list.R
test/06test_merge_list.R
test/07test_mgGCLuster.R
test/08test_scale_v.R
test/09test_tj_list.R
test/10test_tjGCluster.R
test/11test_tjGCluster2.R
test/12test_rotate_coordinate.R
test/13test_cluster_tree.R
test/test_Seurat_Object.R
test/test_module_Seurat_Object.R
