merge_cluster: Merging list

In CBIIT-CGBB/scCorr: A graph-based k-partitioning approach for single-cell gene-gene correlation analysis

Merging list

Description

merge cluster into adjacent cluster if the merged cluster single cell number less than the cutoff.

Usage

merge_cluster(dat, cutoff=5)

Arguments

dat	single cell coordinates from umap or tSNE or ...
cutoff	cutoff for the cell number

Value

A list of indices of data and a list of names of data.

Examples

rm(list=ls());

library(scCorr);

## simulate data
set.seed(1234);
## length of list
list.l <- 50;
out.s  <- NULL;
for (i in 1:list.l){
  n          <- sample(1:50, 1);
  out.s[[i]] <- sample(1:100, n);
}
## check length
lengths(out.s);
out <- merge_cluster(out.s, cutoff=10)
## check output list lengths
lengths(out)
  

CBIIT-CGBB/scCorr documentation built on Dec. 11, 2023, 4 a.m.