Files in CBIIT/geneSetPathwayAnalysis
geneSetPathwayAnalysis
.DS_Store
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DESCRIPTION
NAMESPACE
R/makeTreeList.R
R/mergeGeneSets.R
R/removePatternsFromGeneSets.R
data/emGmt.RData
data/geneAnnotTab.RData
data/geneSets.RData
geneSetPathwayAnalysis.Rproj
inst/.DS_Store
inst/MakeGeneAnnotTab.R
inst/MakeGeneSetsList.R
inst/UpdateGeneSetsNames.R
inst/extdata/220411.Genelist.csv
inst/extdata/230131.Genelist.csv
inst/extdata/UpdateGeneSetsList.R
inst/extdata/UpdateGeneSetsList_Jan23.R
inst/extdata/aladjem_dnarep.txt
inst/extdata/archive/data/150505.DNARgenelist150505.xls
inst/extdata/archive/data/all_gene_sets.txt
inst/extdata/archive/data/all_go_slim_generic.txt
inst/extdata/archive/data/c2.cp.v4.0.symbols.gmt
inst/extdata/archive/data/chebiNscMap.txt
inst/extdata/archive/data/fdaClinNscsChecklist.txt
inst/extdata/archive/data/genePairs.txt
inst/extdata/archive/data/genePos_cellminer_081115.txt
inst/extdata/archive/data/mim_gene_sets.txt
inst/extdata/archive/data/pharmgkb_gene_sets.txt
inst/extdata/archive/data/rDf.txt
inst/extdata/archive/src/RunCombinedLinkerCorrelatedElNetGseaAnalysis.R
inst/extdata/archive/src/RunGenerateCytoscapeNetwork.R
inst/extdata/archive/src/RunGenerateCytoscapeNetworkExample.R
inst/extdata/archive/src/RunNeighborhood.R
inst/extdata/archive/src/colorNetworkNodes.R
inst/extdata/archive/src/drugTargetCorrelation.R
inst/extdata/archive/src/eachNetwork.R
inst/extdata/archive/src/extract_pharmgkb_gene_sets.py
inst/extdata/archive/src/filterBinarySif.R
inst/extdata/archive/src/getNscDrugGeneInteractions.R
inst/extdata/archive/src/getPathwayOverrepresentation.R
inst/extdata/archive/src/vpathToEpath.R
inst/extdata/cellminer_gene_annot.txt
inst/extdata/enrichmentMap/Human_GOBP_AllPathways_no_GO_iea_February_01_2017_symbol.gmt
inst/extdata/enrichmentMap/emGmt.rds
inst/extdata/updateGeneAnnotTab.R
inst/scripts/apoptosis_go_terms.txt
inst/scripts/splitGeneSets.R
man/makeTreeList.Rd
man/mergeGeneSets.Rd
man/removePatternsFromGeneSets.Rd
vignettes/gsea_analysis_clean.Rmd
vignettes/gsea_analysis_clean.nb.html
