mergeGeneSets: Merge Gene Sets

In CBIIT/geneSetPathwayAnalysis: geneSetPathwayAnalysis

Merge Gene Sets

Description

Merge Gene Sets

Usage

mergeGeneSets(
  geneSets,
  name = "merged",
  idConversion = FALSE,
  returnCounts = FALSE,
  forceCache = FALSE
)

Arguments

geneSets	a list of vectors (e.g. gene sets)
name	the name for the merged gene set
idConversion	convert IDs from Uniprot to HGNC (Default: FALSE)
returnCounts	changes return to a list where one entry is "counts" (Default: FALSE)

Value

a list of vectors with one entry (i.e. a gene set) with the given name

Examples

tmp <- list(a=c("abc", "def", "deg", "ghi"), b=c("def", "deg", "ijk"))
mergeGeneSets(tmp, "y")

CBIIT/geneSetPathwayAnalysis documentation built on Sept. 25, 2024, 2:07 a.m.