Man pages for CC-HIC/ccdata
The critical care clinical data toolbox
| add.episode.list.to.record | Adding a list of ccEpisode to ccRecord |
| add.episode.to.record | Adding one ccEpisode object to ccRecord object. |
| add.record.to.record | Combine two ccRecord objects |
| as.number | Convert standard IDs to numbers (character) which can be used... |
| ccEpisode-class | The S3 class which holds data of a single episode. |
| ccRecord-class | The S3 class which holds all the CCHIC patient record -... |
| ccRecord_subset_files | Subset episodes from the specified XML files. |
| ccTable-class | Rearrange and clean the critical care record into a 2D table. |
| code2stname | Convert NHIC codes to the short names |
| create2dclean | Create a 2D wide clean table - low memory |
| create.cctable | construct function of ccTable object |
| data.checklist | This a reference table of NHIC data items. |
| data.quality.report | Create the data quality report |
| data.quality.report.brc | Create the data quality report |
| deltaTime | convert calendar time data in a record to delta time... |
| demg.distribution | demg.distribution Create a plot of the distribution of... |
| demographic.data.completeness | Create a demographic completeness table (in pander table) |
| demographic.patient.spell | Assign unique spell ID to the demographic table |
| extract_file_origin | Extract the original file name from a path and file removing... |
| extractIndexTable | get indexing tables for time label, time-wise value, meta... |
| extractInfo | extract information from data.checklist |
| file.summary | Produce a file summary table |
| for_each_episode | loop over all episodes of a ccRecord object |
| getEpisodePeriod | Get the length of stay based on the first and the last data... |
| getfilter | get the dfilter |
| getItemInfo | Retrieve information of the query code/item names from... |
| getXmlepisode | get the episode data from xml |
| inrange | Check if the values of a vector v is in the given ranges. |
| is.demographic | Check if the item NHIC code or short name belongs to the... |
| is.drugs | Check if the item NHIC code or short name belongs to the... |
| is.laboratory | Check if the item NHIC code or short name belongs to the... |
| is.physiology | Check if the item NHIC code or short name belongs to the... |
| lookup.items | Lookup items information by keywords |
| new.episode | Create a new episode |
| parse.new.xml | Update the RData database |
| physio.distribution | Plot the physiological data distribution. |
| plus-ccRecord-ccEpisode-method | Adding one ccEpisode object to a ccRecord |
| plus-ccRecord-ccRecord-method | Combine two ccRecord objects |
| plus-ccRecord-list-method | Adding a list of ccEpisode objects to a ccRecord |
| plus-ccRecord-NULL-method | Adding nothing to a ccRecord object. |
| reallocateTimeRecord | Propagate a numerical delta time interval record. |
| samplerate2d | Produce a pander table of sample rate of longitudinal data. |
| selectTable | Create wide table from ccRecord |
| site.info | Produce a site id reference table. |
| sql.demographic.table | Create demographic SQL tables. The data type of each column... |
| StdId | S4 class to hold standard IDs such as "NIHR_HIC_ICU_0001" |
| stname2code | Convert short names to NHIC codes |
| stname2longname | Convert short names to long names. |
| sub-ccRecord-ANY-method | Create a subset of ccRecord object from the original one via... |
| sub-ccRecord-character-method | Create a ccRecord subset via selected sites. |
| sub-sub-ccRecord-method | Subseting a ccRecord object and return a list of ccEpisode... |
| table1 | Produce the item specified table one. |
| total.data.point | Return total data point of the ccRecord object. |
| unique_spell | find the unique spell ID. |
| update_database | Update the critical care database (RData) |
| which.classification | Identify the classification - classification1 |
| whichIsCode | give id number from NHIC code like "NIHR_HIC_ICU_xxxx" |
| xml2Data | Convert the XML file to ccRecord |
| xml.file.duration.plot | plot the duration of XML files. |
| xmlLoad | load xml clinical data |
| xml.site.duration.plot | Plot the XML duration in terms of sites. |
| xmlTime2POSIX | Convert time from xml to POSIX format. |
