iterationsplot: Plot the effect of iterations on baseline correction

In CMET-UGent/MicroRaman: Phenotyping of microbial Raman spectroscopy data

Description

This function plots baseline correction for several iterations on the spectral data to determine the optimal number of iterations

Usage

iterationsplot(mdq, itervect, method = "SNIP", plotlegend = TRUE, ...)

Arguments

mdq	a MALDIquant::MassSpectrum (trimmed to relevant wavelengths)
itervect	a numeric vector of different iteration options (max. 11 values)
method	one of "SNIP", "TopHat", "ConvexHull" or "median" for baseline estimation by MALDIquant::estimateBaseline (see ?MALDIquant::estimateBaseline). defaults to "SNIP".
plotlegend	a boolean indicating wether or not to include a legend in lower left corner (defaults to TRUE)
...	additional parameters passed on to plot or lines

CMET-UGent/MicroRaman documentation built on July 25, 2020, 6:20 p.m.