SignetList-class: An S4 class to represent a list of "Signet" objects.

Description Usage Arguments Value Methods (by generic) Slots

Description

An S4 class to represent a list of "Signet" objects.

Usage

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## S4 method for signature 'SignetList'
initialize(.Object, list)

## S4 method for signature 'SignetList'
x[[i]]

## S4 method for signature 'SignetList,ANY,missing'
x[i, j, ..., drop = TRUE]

## S4 method for signature 'SignetList'
summary(object, ...)

Arguments

.Object

A SignetList object.

list

A list of Signet objects.

x

A SignetList object.

i

Index specifying elements to extract or replace.

j

Unused for SignetList objects.

...

Unused for SignetList objects.

drop

Unused for SignetList objects.

object

A SignetList object.

Value

Results of the simulated annealing run for a lisst of pathways.

A SignetList object.

A data frame containing summary statistics for each element (network and subnetwork sizes, subnetwork score, p-value, significant genes list)

Methods (by generic)

Slots

results

A list of Signet objects.


CMPG/signet documentation built on Dec. 12, 2017, 11:05 a.m.