scores: Example of gene selection scores.

Description Usage Format Details Source

Description

A dataset of gene selection scores.

Usage

1

Format

A data frame with 17918 rows and 2 variables:

gene

Gene identifier (Entrez gene ID)

score

Gene selection score

...

Details

These gene scores are the one used in Daub et al. (2013). For a set of SNPs, a z-score has been computed to represent an overall genetic differentiation among several human populations. A gene score corresponds to the maximal value among SNPs located within a given gene.

The table has been generated using the pipeline described here ("Human populations project"): https://github.com/CMPG/polysel

Source

Daub, J. T., Hofer, T., Cutivet, E., Dupanloup, I., Quintana-Murci, L., Robinson-Rechavi, M., & Excoffier, L. (2013). Evidence for polygenic adaptation to pathogens in the human genome. Molecular biology and evolution, 30(7), 1544-1558.


CMPG/signet documentation built on June 19, 2018, 10:21 p.m.