scores: Example of gene selection scores.
In CMPG/signet: signet: Selection Inference in Gene NETworks
scores R Documentation
Example of gene selection scores.
Description
A dataset of gene selection scores.
Usage
scores
Format
A data frame with 17918 rows and 2 variables:
- gene
Gene identifier (Entrez gene ID)
- score
Gene selection score
...
Details
These gene scores are the one used in Daub et al. (2013). For a set of SNPs,
a z-score has been computed to represent an overall genetic differentiation
among several human populations. A gene score corresponds to the maximal
value among SNPs located within a given gene.
The table has been generated using the pipeline described here
("Human populations project"): https://github.com/CMPG/polysel
Source
Daub, J. T., Hofer, T., Cutivet, E., Dupanloup, I.,
Quintana-Murci, L., Robinson-Rechavi, M., & Excoffier, L. (2013). Evidence
for polygenic adaptation to pathogens in the human genome. Molecular biology
and evolution, 30(7), 1544-1558.
CMPG/signet documentation built on Jan. 31, 2024, 12:56 a.m.
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| scores | R Documentation |
Example of gene selection scores.
Description
A dataset of gene selection scores.
Usage
scores
Format
A data frame with 17918 rows and 2 variables:
- gene
Gene identifier (Entrez gene ID)
- score
Gene selection score
...
Details
These gene scores are the one used in Daub et al. (2013). For a set of SNPs, a z-score has been computed to represent an overall genetic differentiation among several human populations. A gene score corresponds to the maximal value among SNPs located within a given gene.
The table has been generated using the pipeline described here ("Human populations project"): https://github.com/CMPG/polysel
Source
Daub, J. T., Hofer, T., Cutivet, E., Dupanloup, I., Quintana-Murci, L., Robinson-Rechavi, M., & Excoffier, L. (2013). Evidence for polygenic adaptation to pathogens in the human genome. Molecular biology and evolution, 30(7), 1544-1558.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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