Files in CNuge/coil
Contextualization and Evaluation of COI-5P Barcode Data
.DS_Store
.Rbuildignore
.Rhistory
.Rproj.user/1CDB1026/pcs/files-pane.pper
.Rproj.user/1CDB1026/pcs/source-pane.pper
.Rproj.user/1CDB1026/rmd-outputs
.Rproj.user/1CDB1026/sources/prop/INDEX
.Rproj.user/shared/notebooks/paths
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/coi5p.r
R/coil.r
R/datasets.r
R/deploy_PHMMs.r
R/pipeline.r
R/print.r
R/subset_PHMM.r
R/sysdata.rda
R/translation.r
README.md
coi5p.Rproj
cran-comments.md
data/example_barcode_data.RData
inst/extdata/example_barcode_data.fasta
man/aa_coi_PHMM.Rd
man/censored_translation.Rd
man/coi5p.Rd
man/coi5p_pipe.Rd
man/coil.Rd
man/coilHex.png
man/example_barcode_data.Rd
man/example_nt_string.Rd
man/flatten_coi5p.Rd
man/frame.Rd
man/indel_check.Rd
man/individual_AAbin.Rd
man/individual_DNAbin.Rd
man/ins_front_trim.Rd
man/leading_ins.Rd
man/new_coi5p.Rd
man/nt_coi_PHMM.Rd
man/print.coi5p.Rd
man/set_frame.Rd
man/subsetPHMM.Rd
man/trans_df.Rd
man/translate.Rd
man/translate_codon.Rd
man/validate_coi5p.Rd
man/which_trans_table.Rd
tests/testthat.R
tests/testthat/test_badCalls.r
tests/testthat/test_delSeq.r
tests/testthat/test_frameNotes.r
tests/testthat/test_goodSeq.r
tests/testthat/test_inSeq.r
tests/testthat/test_longSeq.r
tests/testthat/test_print.r
tests/testthat/test_shortSeq.r
tests/testthat/test_sparseSeq.r
tests/testthat/test_subsetPHMM.r
tests/testthat/test_translate.r
tests/testthat/test_workflow.r
vignettes/.gitignore
vignettes/coil-vignette.Rmd
