flatten_coi5p: Flatten a list of coi5p output objects into a dataframe.

In CNuge/coil: Contextualization and Evaluation of COI-5P Barcode Data

Flatten a list of coi5p output objects into a dataframe.

Description

This helper function is designed to act upon a list of coi5p objects and extract the object components that the user requires.

Usage

flatten_coi5p(x, keep_cols = "all")

Arguments

x	A list of coi5p objects.
keep_cols	The name of a coi5p object component, or a vector of components that should be turned into dataframe columns. Available components are: name, raw, framed, aaSeq, aaScore, indel_likely, stop_codons.

Value

A dataframe with the coi5p object information flattened into columns.

See Also

coi5p_pipe

Examples

#create a list of coi5p objects
coi_output = lapply(example_barcode_data$sequence, function(x){
    coi5p_pipe(x)
  })
#flatten the list into a dataframe
coi_df = flatten_coi5p(coi_output)
#extract only a single column
coi_framed = flatten_coi5p(coi_output, keep_cols = "framed")
#or subset multiple columns
coi_framed = flatten_coi5p(coi_output, keep_cols = c("framed", "aaSeq"))

CNuge/coil documentation built on April 23, 2022, 3:54 a.m.