which_trans_table: Determine the translation table to use for a given taxonomic...
In CNuge/coil: Contextualization and Evaluation of COI-5P Barcode Data
which_trans_table R Documentation
Determine the translation table to use for a given taxonomic group.
Description
Recommends which translation table to use if taxonomic data are available.
The recommendations are based on the translation tables reported for different
taxonomic classifications on the Barcode of Life Data Systems
(BOLD - http://www.boldsystems.org/index.php).
Usage
which_trans_table(x)
Arguments
x
A taxonomic designation (allowed ranks: family, order, class, phylum).
Details
If which_trans_table is unable to identify a translation table,
more information on translation tables can be found here: https://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi
Value
An integer indicating the correct translation table.
Examples
which_trans_table("Chordata") #phylum
which_trans_table("Actinopterygii") #class
which_trans_table("Akentrogonida") #order
which_trans_table("Hydrobiidae") #family
CNuge/coil documentation built on April 23, 2022, 3:54 a.m.
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| which_trans_table | R Documentation |
Determine the translation table to use for a given taxonomic group.
Description
Recommends which translation table to use if taxonomic data are available. The recommendations are based on the translation tables reported for different taxonomic classifications on the Barcode of Life Data Systems (BOLD - http://www.boldsystems.org/index.php).
Usage
which_trans_table(x)
Arguments
x |
A taxonomic designation (allowed ranks: family, order, class, phylum). |
Details
If which_trans_table is unable to identify a translation table, more information on translation tables can be found here: https://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi
Value
An integer indicating the correct translation table.
Examples
which_trans_table("Chordata") #phylum
which_trans_table("Actinopterygii") #class
which_trans_table("Akentrogonida") #order
which_trans_table("Hydrobiidae") #family
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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