adj_seq: Adjust the DNA sequence based on the ntPHMM path.
In CNuge/debar: A Post-Clustering Denoiser for COI-5P Barcode Data
adj_seq R Documentation
Adjust the DNA sequence based on the ntPHMM path.
Description
Adjust the DNA sequence based on the ntPHMM path.
Usage
adj_seq(frame_dat, path_out, censor_length = 3, added_phred = "*")
Arguments
frame_dat
The DNAseq's framing data - generated by set_frame()
path_out
The nucleotide PHMM path for the sequence.
censor_length
Number of base pairs in either direction of a PHMM correction
to convert to placeholder characters.
added_phred
The phred character to use for characters inserted into the original sequence.
Value
A named list.
CNuge/debar documentation built on Jan. 31, 2024, 1:13 p.m.
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| adj_seq | R Documentation |
Adjust the DNA sequence based on the ntPHMM path.
Description
Adjust the DNA sequence based on the ntPHMM path.
Usage
adj_seq(frame_dat, path_out, censor_length = 3, added_phred = "*")
Arguments
frame_dat |
The DNAseq's framing data - generated by set_frame() |
path_out |
The nucleotide PHMM path for the sequence. |
censor_length |
Number of base pairs in either direction of a PHMM correction to convert to placeholder characters. |
added_phred |
The phred character to use for characters inserted into the original sequence. |
Value
A named list.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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