dir_check: Take an input sequence and align both the forward and reverse...
In CNuge/debar: A Post-Clustering Denoiser for COI-5P Barcode Data
dir_check R Documentation
Take an input sequence and align both the forward and reverse compliments to the PHMM.
Description
The fuction returns the sequence, DNAbin and Path and score of the optimal orientation.
Optimal orientation is determined by the direction with the longer string of consecutive
ones in the path
Usage
dir_check(x, nt_PHMM = debar::nt_coi_PHMM)
Arguments
x
A DNAseq class object.
nt_PHMM
The profile hidden Markov model against which the sequence should be compared.
Default is the full COI-5P nucleotide PHMM (nt_coi_PHMM).
CNuge/debar documentation built on Jan. 31, 2024, 1:13 p.m.
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| dir_check | R Documentation |
Take an input sequence and align both the forward and reverse compliments to the PHMM.
Description
The fuction returns the sequence, DNAbin and Path and score of the optimal orientation. Optimal orientation is determined by the direction with the longer string of consecutive ones in the path
Usage
dir_check(x, nt_PHMM = debar::nt_coi_PHMM)
Arguments
x |
A DNAseq class object. |
nt_PHMM |
The profile hidden Markov model against which the sequence should be compared. Default is the full COI-5P nucleotide PHMM (nt_coi_PHMM). |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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