compile_genbank_table: Compile GenBank Submission Information for Appending to...

In CUGBF/deidentifiedDB: Utility to Manage Clemson University COVID-19 Surveillance Data

Compile GenBank Submission Information for Appending to deidentifiedDB

Description

Compile GenBank Submission Information for Appending to deidentifiedDB

Usage

compile_genbank_table(
  accession_report_filpath,
  int_tbl,
  submission_date,
  pipeline_version,
  pipeline_name = "nf-core/viralrecon"
)

Arguments

accession_report_filpath	Path to the Accession Report from GenBank
int_tbl	'int_tbl' returned by compile_genbank function
submission_date	Date of GenBank Submission
pipeline_version	Version of pipeline that generated the consensus sequence
pipeline_name	Name of the pipeline that generated the consensus sequence

Value

Tibble ready for integration into deidentifiedDB database

CUGBF/deidentifiedDB documentation built on Sept. 13, 2023, 6:28 a.m.